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Items: 1 to 20 of 60

1.

Mapping transcriptome-wide protein-RNA interactions to elucidate RNA regulatory programs.

Hannigan MM, Zagore LL, Licatalosi DD.

Quant Biol. 2018 Sep;6(3):228-238. doi: 10.1007/s40484-018-0145-6. Epub 2018 Jul 27.

2.

Global identification of functional microRNA-mRNA interactions in Drosophila.

Wessels HH, Lebedeva S, Hirsekorn A, Wurmus R, Akalin A, Mukherjee N, Ohler U.

Nat Commun. 2019 Apr 9;10(1):1626. doi: 10.1038/s41467-019-09586-z.

3.

Effects of the PIWI/MID domain of Argonaute protein on the association of miRNAi's seed base with the target.

Wang Z, Wang Y, Liu T, Wang Y, Zhang W.

RNA. 2019 May;25(5):620-629. doi: 10.1261/rna.069328.118. Epub 2019 Feb 15.

4.
5.

Modulation of Bacterial sRNAs Activity by Epigenetic Modifications: Inputs from the Eukaryotic miRNAs.

Felden B, Gilot D.

Genes (Basel). 2018 Dec 31;10(1). pii: E22. doi: 10.3390/genes10010022. Review.

6.

Predicting microRNA targeting efficacy in Drosophila.

Agarwal V, Subtelny AO, Thiru P, Ulitsky I, Bartel DP.

Genome Biol. 2018 Oct 4;19(1):152. doi: 10.1186/s13059-018-1504-3.

7.

microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions.

Paraskevopoulou MD, Karagkouni D, Vlachos IS, Tastsoglou S, Hatzigeorgiou AG.

Nat Commun. 2018 Sep 6;9(1):3601. doi: 10.1038/s41467-018-06046-y.

8.

A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data.

Ghoshal A, Zhang J, Roth MA, Xia KM, Grama AY, Chaterji S.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul-Aug;15(4):1037-1051. doi: 10.1109/TCBB.2018.2828305. Epub 2018 Apr 19.

9.

Computational analysis of ribonomics datasets identifies long non-coding RNA targets of γ-herpesviral miRNAs.

Sethuraman S, Thomas M, Gay LA, Renne R.

Nucleic Acids Res. 2018 Sep 19;46(16):8574-8589. doi: 10.1093/nar/gky459.

10.

Modified Cross-Linking, Ligation, and Sequencing of Hybrids (qCLASH) Identifies Kaposi's Sarcoma-Associated Herpesvirus MicroRNA Targets in Endothelial Cells.

Gay LA, Sethuraman S, Thomas M, Turner PC, Renne R.

J Virol. 2018 Mar 28;92(8). pii: e02138-17. doi: 10.1128/JVI.02138-17. Print 2018 Apr 15.

11.

Tiresias: Context-sensitive Approach to Decipher the Presence and Strength of MicroRNA Regulatory Interactions.

Koo J, Zhang J, Chaterji S.

Theranostics. 2018 Jan 1;8(1):277-291. doi: 10.7150/thno.22065. eCollection 2018.

12.

Rules for functional microRNA targeting.

Kim D, Chang HR, Baek D.

BMB Rep. 2017 Nov;50(11):554-559. Review.

13.

A comprehensive, cell specific microRNA catalogue of human peripheral blood.

Juzenas S, Venkatesh G, Hübenthal M, Hoeppner MP, Du ZG, Paulsen M, Rosenstiel P, Senger P, Hofmann-Apitius M, Keller A, Kupcinskas L, Franke A, Hemmrich-Stanisak G.

Nucleic Acids Res. 2017 Sep 19;45(16):9290-9301. doi: 10.1093/nar/gkx706.

14.

Independent prognostic miRNAs for bladder urothelial carcinoma.

Hu Y, Cheng C, Hong Z, Shi Z.

Oncol Lett. 2017 Sep;14(3):3001-3005. doi: 10.3892/ol.2017.6471. Epub 2017 Jun 23.

15.

Opposing activities of oncogenic MIR17HG and tumor suppressive MIR100HG clusters and their gene targets regulate replicative senescence in human adult stem cells.

Lopez MF, Niu P, Wang L, Vogelsang M, Gaur M, Krastins B, Zhao Y, Smagul A, Nussupbekova A, Akanov AA, Jordan IK, Lunyak VV.

NPJ Aging Mech Dis. 2017 Apr 20;3:7. doi: 10.1038/s41514-017-0006-y. eCollection 2017.

16.

Recent computational developments on CLIP-seq data analysis and microRNA targeting implications.

Bottini S, Pratella D, Grandjean V, Repetto E, Trabucchi M.

Brief Bioinform. 2018 Nov 27;19(6):1290-1301. doi: 10.1093/bib/bbx063. Review.

17.

Dissecting miRNA gene repression on single cell level with an advanced fluorescent reporter system.

Lemus-Diaz N, Böker KO, Rodriguez-Polo I, Mitter M, Preis J, Arlt M, Gruber J.

Sci Rep. 2017 Mar 24;7:45197. doi: 10.1038/srep45197.

18.

From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data.

Bottini S, Hamouda-Tekaya N, Tanasa B, Zaragosi LE, Grandjean V, Repetto E, Trabucchi M.

Nucleic Acids Res. 2017 May 19;45(9):e71. doi: 10.1093/nar/gkx007.

19.

RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets.

Alkan F, Wenzel A, Palasca O, Kerpedjiev P, Rudebeck AF, Stadler PF, Hofacker IL, Gorodkin J.

Nucleic Acids Res. 2017 May 5;45(8):e60. doi: 10.1093/nar/gkw1325.

20.

MicroRNA mir-34 provides robustness to environmental stress response via the DAF-16 network in C. elegans.

Isik M, Blackwell TK, Berezikov E.

Sci Rep. 2016 Dec 1;6:36766. doi: 10.1038/srep36766.

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