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Items: 1 to 20 of 96

1.

The More the Merrier-Complexity in Long Non-Coding RNA Loci.

Ziegler C, Kretz M.

Front Endocrinol (Lausanne). 2017 Apr 25;8:90. doi: 10.3389/fendo.2017.00090. eCollection 2017. No abstract available.

2.

Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq - ryhB encodes the regulatory RNA RyhB and a peptide, RyhP.

Neuhaus K, Landstorfer R, Simon S, Schober S, Wright PR, Smith C, Backofen R, Wecko R, Keim DA, Scherer S.

BMC Genomics. 2017 Feb 28;18(1):216. doi: 10.1186/s12864-017-3586-9.

3.

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.

Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, Jiang X, Peery A, Rajagopalan P, Yelamanchi SD, Solanki HS, Raja R, Sathe GJ, Chavan S, Verma R, Patel KM, Jain AP, Syed N, Datta KK, Khan AA, Dammalli M, Jayaram S, Radhakrishnan A, Mitchell CJ, Na CH, Kumar N, Sinnis P, Sharakhov IV, Wang C, Gowda H, Tu Z, Kumar A, Pandey A.

Genome Res. 2017 Jan;27(1):133-144. doi: 10.1101/gr.201368.115. Epub 2016 Nov 15.

4.

Global and cell-type specific properties of lincRNAs with ribosome occupancy.

Wang H, Wang Y, Xie S, Liu Y, Xie Z.

Nucleic Acids Res. 2017 Mar 17;45(5):2786-2796. doi: 10.1093/nar/gkw909.

5.

Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals.

Chernikova D, Managadze D, Glazko GV, Makalowski W, Rogozin IB.

Life (Basel). 2016 Jul 15;6(3). pii: E27. doi: 10.3390/life6030027.

6.

Nuclear Noncoding RNAs and Genome Stability.

Khanduja JS, Calvo IA, Joh RI, Hill IT, Motamedi M.

Mol Cell. 2016 Jul 7;63(1):7-20. doi: 10.1016/j.molcel.2016.06.011. Review.

7.

Identification of Tissue-Specific Protein-Coding and Noncoding Transcripts across 14 Human Tissues Using RNA-seq.

Zhu J, Chen G, Zhu S, Li S, Wen Z, Bin Li, Zheng Y, Shi L.

Sci Rep. 2016 Jun 22;6:28400. doi: 10.1038/srep28400.

8.

LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature.

Pian C, Zhang G, Chen Z, Chen Y, Zhang J, Yang T, Zhang L.

PLoS One. 2016 May 26;11(5):e0154567. doi: 10.1371/journal.pone.0154567. eCollection 2016.

9.

Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells.

Carlevaro-Fita J, Rahim A, Guigó R, Vardy LA, Johnson R.

RNA. 2016 Jun;22(6):867-82. doi: 10.1261/rna.053561.115. Epub 2016 Apr 18.

10.

Long Noncoding RNAs in Cancer Pathways.

Schmitt AM, Chang HY.

Cancer Cell. 2016 Apr 11;29(4):452-63. doi: 10.1016/j.ccell.2016.03.010. Review.

11.

Mechanisms of long noncoding RNA function in development and disease.

Schmitz SU, Grote P, Herrmann BG.

Cell Mol Life Sci. 2016 Jul;73(13):2491-509. doi: 10.1007/s00018-016-2174-5. Epub 2016 Mar 23. Review.

12.

Regulation of functional KCNQ1OT1 lncRNA by β-catenin.

Sunamura N, Ohira T, Kataoka M, Inaoka D, Tanabe H, Nakayama Y, Oshimura M, Kugoh H.

Sci Rep. 2016 Feb 12;6:20690. doi: 10.1038/srep20690.

13.

The Long Noncoding RNA SPRIGHTLY Regulates Cell Proliferation in Primary Human Melanocytes.

Zhao W, Mazar J, Lee B, Sawada J, Li JL, Shelley J, Govindarajan S, Towler D, Mattick JS, Komatsu M, Dinger ME, Perera RJ.

J Invest Dermatol. 2016 Apr;136(4):819-28. doi: 10.1016/j.jid.2016.01.018. Epub 2016 Jan 29.

14.

PANCR, the PITX2 Adjacent Noncoding RNA, Is Expressed in Human Left Atria and Regulates PITX2c Expression.

Gore-Panter SR, Hsu J, Barnard J, Moravec CS, Van Wagoner DR, Chung MK, Smith JD.

Circ Arrhythm Electrophysiol. 2016 Jan;9(1):e003197. doi: 10.1161/CIRCEP.115.003197.

15.

Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells.

Popa A, Lebrigand K, Barbry P, Waldmann R.

BMC Genomics. 2016 Jan 14;17:52. doi: 10.1186/s12864-016-2384-0.

16.

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.

Aghamirzaie D, Batra D, Heath LS, Schneider A, Grene R, Collakova E.

BMC Genomics. 2015 Nov 14;16:928. doi: 10.1186/s12864-015-2108-x.

17.

Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data.

Haase K, Mösch A, Frishman D.

BMC Med Genomics. 2015 Nov 3;8:71. doi: 10.1186/s12920-015-0146-5.

18.

Long non-coding RNA regulation of reproduction and development.

Taylor DH, Chu ET, Spektor R, Soloway PD.

Mol Reprod Dev. 2015 Dec;82(12):932-56. doi: 10.1002/mrd.22581. Epub 2015 Oct 30. Review.

19.

Long non-coding RNAs in corticogenesis: deciphering the non-coding code of the brain.

Aprea J, Calegari F.

EMBO J. 2015 Dec 2;34(23):2865-84. doi: 10.15252/embj.201592655. Epub 2015 Oct 29. Review.

20.

Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.

Jonsson P, Coarfa C, Mesmar F, Raz T, Rajapakshe K, Thompson JF, Gunaratne PH, Williams C.

Mol Endocrinol. 2015 Nov;29(11):1634-45. doi: 10.1210/me.2015-1153. Epub 2015 Oct 1.

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