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Items: 7

1.

miR-MaGiC improves quantification accuracy for small RNA-seq.

Russell PH, Vestal B, Shi W, Rudra PD, Dowell R, Radcliffe R, Saba L, Kechris K.

BMC Res Notes. 2018 May 15;11(1):296. doi: 10.1186/s13104-018-3418-2.

2.

SPAR: small RNA-seq portal for analysis of sequencing experiments.

Kuksa PP, Amlie-Wolf A, Katanic Ž, Valladares O, Wang LS, Leung YY.

Nucleic Acids Res. 2018 Jul 2;46(W1):W36-W42. doi: 10.1093/nar/gky330.

3.

Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench.

Beckers M, Mohorianu I, Stocks M, Applegate C, Dalmay T, Moulton V.

RNA. 2017 Jun;23(6):823-835. doi: 10.1261/rna.059360.116. Epub 2017 Mar 13.

4.

Evaluation of microRNA alignment techniques.

Ziemann M, Kaspi A, El-Osta A.

RNA. 2016 Aug;22(8):1120-38. doi: 10.1261/rna.055509.115. Epub 2016 Jun 9.

5.

Optimization of miRNA-seq data preprocessing.

Tam S, Tsao MS, McPherson JD.

Brief Bioinform. 2015 Nov;16(6):950-63. doi: 10.1093/bib/bbv019. Epub 2015 Apr 17.

6.

iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.

Giurato G, De Filippo MR, Rinaldi A, Hashim A, Nassa G, Ravo M, Rizzo F, Tarallo R, Weisz A.

BMC Bioinformatics. 2013 Dec 13;14:362. doi: 10.1186/1471-2105-14-362.

7.

mirTools 2.0 for non-coding RNA discovery, profiling, and functional annotation based on high-throughput sequencing.

Wu J, Liu Q, Wang X, Zheng J, Wang T, You M, Sheng Sun Z, Shi Q.

RNA Biol. 2013 Jul;10(7):1087-92. doi: 10.4161/rna.25193. Epub 2013 May 29.

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