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Items: 1 to 20 of 125

1.

Comprehensive Analysis Reveals Two Distinct Evolution Patterns of Salmonella Flagellin Gene Clusters.

Liu Y, Zhang DF, Zhou X, Xu L, Zhang L, Shi X.

Front Microbiol. 2017 Dec 22;8:2604. doi: 10.3389/fmicb.2017.02604. eCollection 2017.

2.

Microbiome at the Frontier of Personalized Medicine.

Kashyap PC, Chia N, Nelson H, Segal E, Elinav E.

Mayo Clin Proc. 2017 Dec;92(12):1855-1864. doi: 10.1016/j.mayocp.2017.10.004. Review.

PMID:
29202942
3.

Inquiring into the Gaps of Campylobacter Surveillance Methods.

Magana M, Chatzipanagiotou S, Burriel AR, Ioannidis A.

Vet Sci. 2017 Jul 19;4(3). pii: E36. doi: 10.3390/vetsci4030036. Review.

4.

Impacts of Genome-Wide Analyses on Our Understanding of Human Herpesvirus Diversity and Evolution.

Renner DW, Szpara ML.

J Virol. 2017 Dec 14;92(1). pii: e00908-17. doi: 10.1128/JVI.00908-17. Print 2018 Jan 1. Review.

5.

Laboratory systems as an antibacterial resistance containment tool in Africa.

Okeke IN.

Afr J Lab Med. 2016 Oct 31;5(3):497. doi: 10.4102/ajlm.v5i3.497. eCollection 2016. Review.

6.

Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis.

Quainoo S, Coolen JPM, van Hijum SAFT, Huynen MA, Melchers WJG, van Schaik W, Wertheim HFL.

Clin Microbiol Rev. 2017 Oct;30(4):1015-1063. doi: 10.1128/CMR.00016-17. Review. Erratum in: Clin Microbiol Rev. 2017 Nov 1;31(1):.

PMID:
28855266
7.

Validation of β-lactam minimum inhibitory concentration predictions for pneumococcal isolates with newly encountered penicillin binding protein (PBP) sequences.

Li Y, Metcalf BJ, Chochua S, Li Z, Gertz RE Jr, Walker H, Hawkins PA, Tran T, McGee L, Beall BW; Active Bacterial Core surveillance team.

BMC Genomics. 2017 Aug 15;18(1):621. doi: 10.1186/s12864-017-4017-7.

8.

MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling.

Piro VC, Matschkowski M, Renard BY.

Microbiome. 2017 Aug 14;5(1):101. doi: 10.1186/s40168-017-0318-y.

9.

Metagenomics: The Next Culture-Independent Game Changer.

Forbes JD, Knox NC, Ronholm J, Pagotto F, Reimer A.

Front Microbiol. 2017 Jul 4;8:1069. doi: 10.3389/fmicb.2017.01069. eCollection 2017. Review.

10.

Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads.

Poulsen TM, Frith M.

BMC Bioinformatics. 2017 Jun 12;18(1):299. doi: 10.1186/s12859-017-1710-0.

11.

Validation and Implementation of Clinical Laboratory Improvements Act-Compliant Whole-Genome Sequencing in the Public Health Microbiology Laboratory.

Kozyreva VK, Truong CL, Greninger AL, Crandall J, Mukhopadhyay R, Chaturvedi V.

J Clin Microbiol. 2017 Aug;55(8):2502-2520. doi: 10.1128/JCM.00361-17. Epub 2017 Jun 7.

12.

A coevolution analysis for identifying protein-protein interactions by Fourier transform.

Yin C, Yau SS.

PLoS One. 2017 Apr 21;12(4):e0174862. doi: 10.1371/journal.pone.0174862. eCollection 2017.

13.

Comprehensive Whole-Genome Sequencing and Reporting of Drug Resistance Profiles on Clinical Cases of Mycobacterium tuberculosis in New York State.

Shea J, Halse TA, Lapierre P, Shudt M, Kohlerschmidt D, Van Roey P, Limberger R, Taylor J, Escuyer V, Musser KA.

J Clin Microbiol. 2017 Jun;55(6):1871-1882. doi: 10.1128/JCM.00298-17. Epub 2017 Apr 5.

14.

Whole-genome sequencing of a quarter-century melioidosis outbreak in temperate Australia uncovers a region of low-prevalence endemicity.

Chapple SN, Sarovich DS, Holden MT, Peacock SJ, Buller N, Golledge C, Mayo M, Currie BJ, Price EP.

Microb Genom. 2016 Jul 11;2(7):e000067. doi: 10.1099/mgen.0.000067. eCollection 2016 Jul.

15.

K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets.

Pessia A, Grad Y, Cobey S, Puranen JS, Corander J.

Microb Genom. 2015 Jul 15;1(1):e000025. doi: 10.1099/mgen.0.000025. eCollection 2015 Jul.

16.

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

Joensen KG, Engsbro ALØ, Lukjancenko O, Kaas RS, Lund O, Westh H, Aarestrup FM.

Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1325-1338. doi: 10.1007/s10096-017-2947-2. Epub 2017 Mar 11. Erratum in: Eur J Clin Microbiol Infect Dis. 2017 May 9;:.

17.

Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections.

Llarena AK, Taboada E, Rossi M.

J Clin Microbiol. 2017 May;55(5):1269-1275. doi: 10.1128/JCM.00017-17. Epub 2017 Mar 1. Review.

19.

Panel strain of Klebsiella pneumoniae for beta-lactam antibiotic evaluation: their phenotypic and genotypic characterization.

Dsouza R, Pinto NA, Hwang I, Cho Y, Yong D, Choi J, Lee K, Chong Y.

PeerJ. 2017 Jan 19;5:e2896. doi: 10.7717/peerj.2896. eCollection 2017.

20.

A joint cross-border investigation of a cluster of multidrug-resistant tuberculosis in Austria, Romania and Germany in 2014 using classic, genotyping and whole genome sequencing methods: lessons learnt.

Fiebig L, Kohl TA, Popovici O, Mühlenfeld M, Indra A, Homorodean D, Chiotan D, Richter E, Rüsch-Gerdes S, Schmidgruber B, Beckert P, Hauer B, Niemann S, Allerberger F, Haas W.

Euro Surveill. 2017 Jan 12;22(2). pii: 30439. doi: 10.2807/1560-7917.ES.2017.22.2.30439.

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