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Items: 1 to 20 of 36


Temporal dynamics of uncultured viruses: a new dimension in viral diversity.

Arkhipova K, Skvortsov T, Quinn JP, McGrath JW, Allen CC, Dutilh BE, McElarney Y, Kulakov LA.

ISME J. 2018 Jan;12(1):199-211. doi: 10.1038/ismej.2017.157. Epub 2017 Oct 13.


Population-Genomic Insights into Variation in Prevotella intermedia and Prevotella nigrescens Isolates and Its Association with Periodontal Disease.

Zhang Y, Zhen M, Zhan Y, Song Y, Zhang Q, Wang J.

Front Cell Infect Microbiol. 2017 Sep 21;7:409. doi: 10.3389/fcimb.2017.00409. eCollection 2017.


MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes.

Moller AG, Liang C.

PeerJ. 2017 Sep 7;5:e3788. doi: 10.7717/peerj.3788. eCollection 2017.


Structured Populations of Sulfolobus acidocaldarius with Susceptibility to Mobile Genetic Elements.

Anderson RE, Kouris A, Seward CH, Campbell KM, Whitaker RJ.

Genome Biol Evol. 2017 Jun 1;9(6):1699-1710. doi: 10.1093/gbe/evx104.


Comparative study of viromes from freshwater samples of the Ile-Balkhash region of Kazakhstan captured through metagenomic analysis.

Alexyuk MS, Turmagambetova AS, Alexyuk PG, Bogoyavlenskiy AP, Berezin VE.

Virusdisease. 2017 Mar;28(1):18-25. doi: 10.1007/s13337-016-0353-5. Epub 2017 Feb 1.


Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements.

Zhang Q, Ye Y.

BMC Bioinformatics. 2017 Feb 6;18(1):92. doi: 10.1186/s12859-017-1512-4.


Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture.

Gambelli L, Cremers G, Mesman R, Guerrero S, Dutilh BE, Jetten MS, Op den Camp HJ, van Niftrik L.

Front Microbiol. 2016 Nov 8;7:1740. eCollection 2016.


CRISPRdigger: detecting CRISPRs with better direct repeat annotations.

Ge R, Mai G, Wang P, Zhou M, Luo Y, Cai Y, Zhou F.

Sci Rep. 2016 Sep 6;6:32942. doi: 10.1038/srep32942.


Characterization of CRISPR RNA transcription by exploiting stranded metatranscriptomic data.

Ye Y, Zhang Q.

RNA. 2016 Jul;22(7):945-56. doi: 10.1261/rna.055988.116. Epub 2016 May 17.


CRISPRDetect: A flexible algorithm to define CRISPR arrays.

Biswas A, Staals RH, Morales SE, Fineran PC, Brown CM.

BMC Genomics. 2016 May 17;17:356. doi: 10.1186/s12864-016-2627-0.


Computational prediction of CRISPR cassettes in gut metagenome samples from Chinese type-2 diabetic patients and healthy controls.

Mangericao TC, Peng Z, Zhang X.

BMC Syst Biol. 2016 Jan 11;10 Suppl 1:5. doi: 10.1186/s12918-015-0248-x.


Clustered Regularly Interspaced Short Palindromic Repeats Are emm Type-Specific in Highly Prevalent Group A Streptococci.

Zheng PX, Chan YC, Chiou CS, Chiang-Ni C, Wang SY, Tsai PJ, Chuang WJ, Lin YS, Liu CC, Wu JJ.

PLoS One. 2015 Dec 28;10(12):e0145223. doi: 10.1371/journal.pone.0145223. eCollection 2015.


Diversity of CRISPR-Cas immune systems and molecular machines.

Barrangou R.

Genome Biol. 2015 Nov 9;16:247. doi: 10.1186/s13059-015-0816-9. Review.


CRISPRs provide broad and robust protection to oral microbial flora of gingival health against bacteriophage challenge.

Zhou H, Zhao H, Zheng J, Gao Y, Zhang Y, Zhao F, Wang J.

Protein Cell. 2015 Jul;6(7):541-545. doi: 10.1007/s13238-015-0182-0. No abstract available.


The Contribution of Genetic Recombination to CRISPR Array Evolution.

Kupczok A, Landan G, Dagan T.

Genome Biol Evol. 2015 Jun 16;7(7):1925-39. doi: 10.1093/gbe/evv113.


Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis.

Ojala T, Kankainen M, Castro J, Cerca N, Edelman S, Westerlund-Wikström B, Paulin L, Holm L, Auvinen P.

BMC Genomics. 2014 Dec 5;15:1070. doi: 10.1186/1471-2164-15-1070.


CRISPR-induced distributed immunity in microbial populations.

Childs LM, England WE, Young MJ, Weitz JS, Whitaker RJ.

PLoS One. 2014 Jul 7;9(7):e101710. doi: 10.1371/journal.pone.0101710. eCollection 2014.


Conservation of streptococcal CRISPRs on human skin and saliva.

Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT.

BMC Microbiol. 2014 Jun 6;14:146. doi: 10.1186/1471-2180-14-146.


Classification and evolution of type II CRISPR-Cas systems.

Chylinski K, Makarova KS, Charpentier E, Koonin EV.

Nucleic Acids Res. 2014 Jun;42(10):6091-105. doi: 10.1093/nar/gku241. Epub 2014 Apr 11. Review.


Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs.

Gogleva AA, Gelfand MS, Artamonova II.

BMC Genomics. 2014 Mar 17;15:202. doi: 10.1186/1471-2164-15-202.

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