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Items: 1 to 20 of 71


A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals.

Ros-Freixedes R, Gonen S, Gorjanc G, Hickey JM.

Genet Sel Evol. 2017 Oct 25;49(1):78. doi: 10.1186/s12711-017-0353-y.


Estimation of kinship coefficient in structured and admixed populations using sparse sequencing data.

Dou J, Sun B, Sim X, Hughes JD, Reilly DF, Tai ES, Liu J, Wang C.

PLoS Genet. 2017 Sep 29;13(9):e1007021. doi: 10.1371/journal.pgen.1007021. eCollection 2017 Sep.


Identifying and mitigating batch effects in whole genome sequencing data.

Tom JA, Reeder J, Forrest WF, Graham RR, Hunkapiller J, Behrens TW, Bhangale TR.

BMC Bioinformatics. 2017 Jul 24;18(1):351. doi: 10.1186/s12859-017-1756-z.


Paleogenomic Evidence for Multi-generational Mixing between Neolithic Farmers and Mesolithic Hunter-Gatherers in the Lower Danube Basin.

González-Fortes G, Jones ER, Lightfoot E, Bonsall C, Lazar C, Grandal-d'Anglade A, Garralda MD, Drak L, Siska V, Simalcsik A, Boroneanţ A, Vidal Romaní JR, Vaqueiro Rodríguez M, Arias P, Pinhasi R, Manica A, Hofreiter M.

Curr Biol. 2017 Jun 19;27(12):1801-1810.e10. doi: 10.1016/j.cub.2017.05.023. Epub 2017 May 25.


Extremely low-coverage whole genome sequencing in South Asians captures population genomics information.

Rustagi N, Zhou A, Watkins WS, Gedvilaite E, Wang S, Ramesh N, Muzny D, Gibbs RA, Jorde LB, Yu F, Xing J.

BMC Genomics. 2017 May 22;18(1):396. doi: 10.1186/s12864-017-3767-6.


Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel.

Mitt M, Kals M, Pärn K, Gabriel SB, Lander ES, Palotie A, Ripatti S, Morris AP, Metspalu A, Esko T, Mägi R, Palta P.

Eur J Hum Genet. 2017 Jun;25(7):869-876. doi: 10.1038/ejhg.2017.51. Epub 2017 Apr 12.


GeneImp: Fast Imputation to Large Reference Panels Using Genotype Likelihoods from Ultralow Coverage Sequencing.

Spiliopoulou A, Colombo M, Orchard P, Agakov F, McKeigue P.

Genetics. 2017 May;206(1):91-104. doi: 10.1534/genetics.117.200063. Epub 2017 Mar 27.


A combined reference panel from the 1000 Genomes and UK10K projects improved rare variant imputation in European and Chinese samples.

Chou WC, Zheng HF, Cheng CH, Yan H, Wang L, Han F, Richards JB, Karasik D, Kiel DP, Hsu YH.

Sci Rep. 2016 Dec 22;6:39313. doi: 10.1038/srep39313.


PreCimp: Pre-collapsing imputation approach increases imputation accuracy of rare variants in terms of collapsed variables.

Kim YJ, Lee J, Kim BJ; T2D-Genes Consortium, Park T.

Genet Epidemiol. 2017 Jan;41(1):41-50. doi: 10.1002/gepi.22020. Epub 2016 Nov 10.


Low-, high-coverage, and two-stage DNA sequencing in the design of the genetic association study.

Xu C, Wu K, Zhang JG, Shen H, Deng HW.

Genet Epidemiol. 2017 Apr;41(3):187-197. doi: 10.1002/gepi.22015. Epub 2016 Nov 4.


Ascertainment bias from imputation methods evaluation in wheat.

Brandariz SP, González Reymúndez A, Lado B, Malosetti M, Garcia AA, Quincke M, von Zitzewitz J, Castro M, Matus I, Del Pozo A, Castro AJ, Gutiérrez L.

BMC Genomics. 2016 Oct 4;17(1):773.


Next-generation sequencing in neuromuscular diseases.

Efthymiou S, Manole A, Houlden H.

Curr Opin Neurol. 2016 Oct;29(5):527-36. doi: 10.1097/WCO.0000000000000374. Review.


Advantages of continuous genotype values over genotype classes for GWAS in higher polyploids: a comparative study in hexaploid chrysanthemum.

Grandke F, Singh P, Heuven HC, de Haan JR, Metzler D.

BMC Genomics. 2016 Aug 24;17:672. doi: 10.1186/s12864-016-2926-5.


Rapid genotype imputation from sequence without reference panels.

Davies RW, Flint J, Myers S, Mott R.

Nat Genet. 2016 Aug;48(8):965-969. doi: 10.1038/ng.3594. Epub 2016 Jul 4.


Fast and accurate long-range phasing in a UK Biobank cohort.

Loh PR, Palamara PF, Price AL.

Nat Genet. 2016 Jul;48(7):811-6. doi: 10.1038/ng.3571. Epub 2016 Jun 6.


Identification of genetic variants associated with susceptibility to West Nile virus neuroinvasive disease.

Long D, Deng X, Singh P, Loeb M, Lauring AS, Seielstad M.

Genes Immun. 2016 Jul;17(5):298-304. doi: 10.1038/gene.2016.21. Epub 2016 May 12.


Impact of imputation methods on the amount of genetic variation captured by a single-nucleotide polymorphism panel in soybeans.

Xavier A, Muir WM, Rainey KM.

BMC Bioinformatics. 2016 Feb 2;17:55. doi: 10.1186/s12859-016-0899-7.


An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum).

Han K, Jeong HJ, Yang HB, Kang SM, Kwon JK, Kim S, Choi D, Kang BC.

DNA Res. 2016 Apr;23(2):81-91. doi: 10.1093/dnares/dsv038. Epub 2016 Jan 6.


Connectivity Homology Enables Inter-Species Network Models of Synthetic Lethality.

Jacunski A, Dixon SJ, Tatonetti NP.

PLoS Comput Biol. 2015 Oct 9;11(10):e1004506. doi: 10.1371/journal.pcbi.1004506. eCollection 2015 Oct.


A vision for ubiquitous sequencing.

Erlich Y.

Genome Res. 2015 Oct;25(10):1411-6. doi: 10.1101/gr.191692.115.

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