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Items: 14

1.

Adaptive Benefits of Storage Strategy and Dual AMPK/TOR Signaling in Metabolic Stress Response.

Pfeuty B, Thommen Q.

PLoS One. 2016 Aug 9;11(8):e0160247. doi: 10.1371/journal.pone.0160247. eCollection 2016.

2.

Glucose becomes one of the worst carbon sources for E.coli on poor nitrogen sources due to suboptimal levels of cAMP.

Bren A, Park JO, Towbin BD, Dekel E, Rabinowitz JD, Alon U.

Sci Rep. 2016 Apr 25;6:24834. doi: 10.1038/srep24834.

3.

Cellular Growth Arrest and Persistence from Enzyme Saturation.

Ray JC, Wickersheim ML, Jalihal AP, Adeshina YO, Cooper TF, Balázsi G.

PLoS Comput Biol. 2016 Mar 24;12(3):e1004825. doi: 10.1371/journal.pcbi.1004825. eCollection 2016 Mar.

4.

Regulating ehrlich and demethiolation pathways for alcohols production by the expression of ubiquitin-protein ligase gene HUWE1.

Zhang Q, Jia KZ, Xia ST, Xu YH, Liu RS, Li HM, Tang YJ.

Sci Rep. 2016 Feb 10;6:20828. doi: 10.1038/srep20828.

5.

Sequential metabolic phases as a means to optimize cellular output in a constant environment.

Palinkas A, Bulik S, Bockmayr A, Holzhütter HG.

PLoS One. 2015 Mar 18;10(3):e0118347. doi: 10.1371/journal.pone.0118347. eCollection 2015.

6.

A genetically encoded Förster resonance energy transfer sensor for monitoring in vivo trehalose-6-phosphate dynamics.

Peroza EA, Ewald JC, Parakkal G, Skotheim JM, Zamboni N.

Anal Biochem. 2015 Apr 1;474:1-7. doi: 10.1016/j.ab.2014.12.019. Epub 2015 Jan 9.

7.

Computing the functional proteome: recent progress and future prospects for genome-scale models.

O'Brien EJ, Palsson BO.

Curr Opin Biotechnol. 2015 Aug;34:125-34. doi: 10.1016/j.copbio.2014.12.017. Epub 2015 Jan 8. Review.

8.

Improving fatty acids production by engineering dynamic pathway regulation and metabolic control.

Xu P, Li L, Zhang F, Stephanopoulos G, Koffas M.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11299-304. doi: 10.1073/pnas.1406401111. Epub 2014 Jul 21.

9.

Noise minimisation in gene expression switches.

Monteoliva D, McCarthy CB, Diambra L.

PLoS One. 2013 Dec 23;8(12):e84020. doi: 10.1371/journal.pone.0084020. eCollection 2013.

10.

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis.

Chubukov V, Uhr M, Le Chat L, Kleijn RJ, Jules M, Link H, Aymerich S, Stelling J, Sauer U.

Mol Syst Biol. 2013 Nov 26;9:709. doi: 10.1038/msb.2013.66.

11.

Indirect and suboptimal control of gene expression is widespread in bacteria.

Price MN, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP.

Mol Syst Biol. 2013 Apr 16;9:660. doi: 10.1038/msb.2013.16.

12.

Dissecting specific and global transcriptional regulation of bacterial gene expression.

Gerosa L, Kochanowski K, Heinemann M, Sauer U.

Mol Syst Biol. 2013 Apr 16;9:658. doi: 10.1038/msb.2013.14.

13.

Synthetic gene circuits for metabolic control: design trade-offs and constraints.

Oyarzún DA, Stan GB.

J R Soc Interface. 2013 Jan 6;10(78):20120671. doi: 10.1098/rsif.2012.0671. Epub 2012 Nov 8.

14.

Multi-criteria optimization of regulation in metabolic networks.

Higuera C, Villaverde AF, Banga JR, Ross J, Morán F.

PLoS One. 2012;7(7):e41122. doi: 10.1371/journal.pone.0041122. Epub 2012 Jul 26. Erratum in: PLoS One. 2012;7(11). doi:10.1371/annotation/ab5c1e64-2c46-421e-a1f7-e79cc415534d.

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