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GRHL3 binding and enhancers rearrange as epidermal keratinocytes transition between functional states.

Klein RH, Lin Z, Hopkin AS, Gordon W, Tsoi LC, Liang Y, Gudjonsson JE, Andersen B.

PLoS Genet. 2017 Apr 26;13(4):e1006745. doi: 10.1371/journal.pgen.1006745. eCollection 2017 Apr.


Flicr, a long noncoding RNA, modulates Foxp3 expression and autoimmunity.

Zemmour D, Pratama A, Loughhead SM, Mathis D, Benoist C.

Proc Natl Acad Sci U S A. 2017 Apr 25;114(17):E3472-E3480. doi: 10.1073/pnas.1700946114. Epub 2017 Apr 10.


Role of steroid receptor and coregulator mutations in hormone-dependent cancers.

Groner AC, Brown M.

J Clin Invest. 2017 Apr 3;127(4):1126-1135. doi: 10.1172/JCI88885. Epub 2017 Apr 3.


BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes.

de Santiago I, Liu W, Yuan K, O'Reilly M, Chilamakuri CS, Ponder BA, Meyer KB, Markowetz F.

Genome Biol. 2017 Feb 24;18(1):39. doi: 10.1186/s13059-017-1165-7.


Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence.

Maheshwari S, Ishii T, Brown CT, Houben A, Comai L.

Genome Res. 2017 Mar;27(3):471-478. doi: 10.1101/gr.214619.116. Epub 2017 Feb 21.


Inhibition of Inflammatory Gene Transcription by IL-10 Is Associated with Rapid Suppression of Lipopolysaccharide-Induced Enhancer Activation.

Conaway EA, de Oliveira DC, McInnis CM, Snapper SB, Horwitz BH.

J Immunol. 2017 Apr 1;198(7):2906-2915. doi: 10.4049/jimmunol.1601781. Epub 2017 Feb 17.


RNF40 regulates gene expression in an epigenetic context-dependent manner.

Xie W, Nagarajan S, Baumgart SJ, Kosinsky RL, Najafova Z, Kari V, Hennion M, Indenbirken D, Bonn S, Grundhoff A, Wegwitz F, Mansouri A, Johnsen SA.

Genome Biol. 2017 Feb 16;18(1):32. doi: 10.1186/s13059-017-1159-5.


Integrated genomic analyses of de novo pathways underlying atypical meningiomas.

Harmancı AS, Youngblood MW, Clark VE, Coşkun S, Henegariu O, Duran D, Erson-Omay EZ, Kaulen LD, Lee TI, Abraham BJ, Simon M, Krischek B, Timmer M, Goldbrunner R, Omay SB, Baranoski J, Baran B, Carrión-Grant G, Bai H, Mishra-Gorur K, Schramm J, Moliterno J, Vortmeyer AO, Bilgüvar K, Yasuno K, Young RA, Günel M.

Nat Commun. 2017 Feb 14;8:14433. doi: 10.1038/ncomms14433.


Estrogen receptor α wields treatment-specific enhancers between morphologically similar endometrial tumors.

Droog M, Nevedomskaya E, Dackus GM, Fles R, Kim Y, Hollema H, Mourits M, Nederlof PM, van Boven HH, Linn SC, van Leeuwen FE, Wessels LF, Zwart W.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1316-E1325. doi: 10.1073/pnas.1615233114. Epub 2017 Feb 6.


Next-Generation Sequencing in Oncology: Genetic Diagnosis, Risk Prediction and Cancer Classification.

Kamps R, Brandão RD, Bosch BJ, Paulussen AD, Xanthoulea S, Blok MJ, Romano A.

Int J Mol Sci. 2017 Jan 31;18(2). pii: E308. doi: 10.3390/ijms18020308. Review.


The Saccharomyces cerevisiae Cdk8 Mediator Represses AQY1 Transcription by Inhibiting Set1p-Dependent Histone Methylation.

Law MJ, Finger MA.

G3 (Bethesda). 2017 Mar 10;7(3):1001-1010. doi: 10.1534/g3.117.039586.


Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex.

Gray LT, Yao Z, Nguyen TN, Kim TK, Zeng H, Tasic B.

Elife. 2017 Jan 23;6. pii: e21883. doi: 10.7554/eLife.21883.


upSET, the Drosophila homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks.

McElroy KA, Jung YL, Zee BM, Wang CI, Park PJ, Kuroda MI.

G3 (Bethesda). 2017 Feb 9;7(2):625-635. doi: 10.1534/g3.116.037788.


Integrative genomic and transcriptomic analysis for pinpointing recurrent alterations of plant homeodomain genes and their clinical significance in breast cancer.

Yu H, Jiang Y, Liu L, Shan W, Chu X, Yang Z, Yang ZQ.

Oncotarget. 2017 Feb 21;8(8):13099-13115. doi: 10.18632/oncotarget.14402.


HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics.

Ashoor H, Louis-Brennetot C, Janoueix-Lerosey I, Bajic VB, Boeva V.

Nucleic Acids Res. 2017 May 5;45(8):e58. doi: 10.1093/nar/gkw1319.


An Experimental Analysis of the Molecular Effects of Trastuzumab (Herceptin) and Fulvestrant (Falsodex), as Single Agents or in Combination, on Human HR+/HER2+ Breast Cancer Cell Lines and Mouse Tumor Xenografts.

Chen Q, Weng Z, Lu Y, Jia Y, Ding L, Bai F, Ge M, Lin Q, Wu K.

PLoS One. 2017 Jan 3;12(1):e0168960. doi: 10.1371/journal.pone.0168960. eCollection 2017.


ALTRE: workflow for defining ALTered Regulatory Elements using chromatin accessibility data.

Baskin E, Farouni R, Mathé EA.

Bioinformatics. 2017 Mar 1;33(5):740-742. doi: 10.1093/bioinformatics/btw688.


BRD4 promotes p63 and GRHL3 expression downstream of FOXO in mammary epithelial cells.

Nagarajan S, Bedi U, Budida A, Hamdan FH, Mishra VK, Najafova Z, Xie W, Alawi M, Indenbirken D, Knapp S, Chiang CM, Grundhoff A, Kari V, Scheel CH, Wegwitz F, Johnsen SA.

Nucleic Acids Res. 2017 Apr 7;45(6):3130-3145. doi: 10.1093/nar/gkw1276.


Nitric Oxide Modulates Histone Acetylation at Stress Genes by Inhibition of Histone Deacetylases.

Mengel A, Ageeva A, Georgii E, Bernhardt J, Wu K, Durner J, Lindermayr C.

Plant Physiol. 2017 Feb;173(2):1434-1452. doi: 10.1104/pp.16.01734. Epub 2016 Dec 15.


Fox transcription factors: from development to disease.

Golson ML, Kaestner KH.

Development. 2016 Dec 15;143(24):4558-4570. Review.


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