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Items: 1 to 20 of 32

1.

Baseline mRNA expression differs widely between common laboratory strains of zebrafish.

Holden LA, Brown KH.

Sci Rep. 2018 Mar 19;8(1):4780. doi: 10.1038/s41598-018-23129-4.

2.

Population genetic diversity in zebrafish lines.

Balik-Meisner M, Truong L, Scholl EH, Tanguay RL, Reif DM.

Mamm Genome. 2018 Feb;29(1-2):90-100. doi: 10.1007/s00335-018-9735-x. Epub 2018 Jan 24.

3.

A deep auto-encoder model for gene expression prediction.

Xie R, Wen J, Quitadamo A, Cheng J, Shi X.

BMC Genomics. 2017 Nov 17;18(Suppl 9):845. doi: 10.1186/s12864-017-4226-0.

4.

Genome-wide analysis reveals differential selection involved with copy number variation in diverse Chinese Cattle.

Yang L, Xu L, Zhu B, Niu H, Zhang W, Miao J, Shi X, Zhang M, Chen Y, Zhang L, Gao X, Gao H, Li L, Liu GE, Li J.

Sci Rep. 2017 Oct 30;7(1):14299. doi: 10.1038/s41598-017-14768-0.

5.

Tumor diversity and evolution revealed through RADseq.

Perry EB, Makohon-Moore A, Zheng C, Kaufman CK, Cai J, Iacobuzio-Donahue CA, White RM.

Oncotarget. 2017 Jun 27;8(26):41792-41805. doi: 10.18632/oncotarget.18355.

6.

Utilizing Zebrafish Visual Behaviors in Drug Screening for Retinal Degeneration.

Ganzen L, Venkatraman P, Pang CP, Leung YF, Zhang M.

Int J Mol Sci. 2017 Jun 2;18(6). pii: E1185. doi: 10.3390/ijms18061185. Review.

7.

Characterization of Copy Number Variation's Potential Role in Marek's Disease.

Xu L, He Y, Ding Y, Sun G, Carrillo JA, Li Y, Ghaly MM, Ma L, Zhang H, Liu GE, Song J.

Int J Mol Sci. 2017 May 9;18(5). pii: E1020. doi: 10.3390/ijms18051020.

8.

Disruption of pdgfra alters endocardial and myocardial fusion during zebrafish cardiac assembly.

El-Rass S, Eisa-Beygi S, Khong E, Brand-Arzamendi K, Mauro A, Zhang H, Clark KJ, Ekker SC, Wen XY.

Biol Open. 2017 Mar 15;6(3):348-357. doi: 10.1242/bio.021212.

9.

Atrazine exposure elicits copy number alterations in the zebrafish genome.

Wirbisky SE, Freeman JL.

Comp Biochem Physiol C Toxicol Pharmacol. 2017 Apr;194:1-8. doi: 10.1016/j.cbpc.2017.01.003. Epub 2017 Jan 19.

10.

Neuromodulatory Regulation of Behavioral Individuality in Zebrafish.

Pantoja C, Hoagland A, Carroll EC, Karalis V, Conner A, Isacoff EY.

Neuron. 2016 Aug 3;91(3):587-601. doi: 10.1016/j.neuron.2016.06.016. Epub 2016 Jul 7.

11.

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE.

DNA Res. 2016 Jun;23(3):253-62. doi: 10.1093/dnares/dsw013. Epub 2016 Apr 15.

12.

Population-genetic properties of differentiated copy number variations in cattle.

Xu L, Hou Y, Bickhart DM, Zhou Y, Hay el HA, Song J, Sonstegard TS, Van Tassell CP, Liu GE.

Sci Rep. 2016 Mar 23;6:23161. doi: 10.1038/srep23161.

13.

Pseudo-De Novo Assembly and Analysis of Unmapped Genome Sequence Reads in Wild Zebrafish Reveal Novel Gene Content.

Faber-Hammond JJ, Brown KH.

Zebrafish. 2016 Apr;13(2):95-102. doi: 10.1089/zeb.2015.1154. Epub 2016 Feb 17.

14.

Population Structure Shapes Copy Number Variation in Malaria Parasites.

Cheeseman IH, Miller B, Tan JC, Tan A, Nair S, Nkhoma SC, De Donato M, Rodulfo H, Dondorp A, Branch OH, Mesia LR, Newton P, Mayxay M, Amambua-Ngwa A, Conway DJ, Nosten F, Ferdig MT, Anderson TJ.

Mol Biol Evol. 2016 Mar;33(3):603-20. doi: 10.1093/molbev/msv282. Epub 2015 Nov 26.

15.

Advancing biology through a deeper understanding of zebrafish ecology and evolution.

Parichy DM.

Elife. 2015 Mar 25;4. doi: 10.7554/eLife.05635. Review.

16.

No Evidence that MicroRNAs Coevolve with Genes Located in Copy Number Regions.

Jovelin R.

Mol Biol Evol. 2015 Jul;32(7):1890-4. doi: 10.1093/molbev/msv073. Epub 2015 Mar 24.

17.

Wild sex in zebrafish: loss of the natural sex determinant in domesticated strains.

Wilson CA, High SK, McCluskey BM, Amores A, Yan YL, Titus TA, Anderson JL, Batzel P, Carvan MJ 3rd, Schartl M, Postlethwait JH.

Genetics. 2014 Nov;198(3):1291-308. doi: 10.1534/genetics.114.169284. Epub 2014 Sep 18.

18.

Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes.

Hirase S, Ozaki H, Iwasaki W.

BMC Genomics. 2014 Aug 29;15:735. doi: 10.1186/1471-2164-15-735.

19.

A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

Braasch I, Peterson SM, Desvignes T, McCluskey BM, Batzel P, Postlethwait JH.

J Exp Zool B Mol Dev Evol. 2015 Jun;324(4):316-41. doi: 10.1002/jez.b.22589. Epub 2014 Aug 11. Review.

20.

Inhibition of endogenous MTF-1 signaling in zebrafish embryos identifies novel roles for MTF-1 in development.

O'Shields B, McArthur AG, Holowiecki A, Kamper M, Tapley J, Jenny MJ.

Biochim Biophys Acta. 2014 Sep;1843(9):1818-33. doi: 10.1016/j.bbamcr.2014.04.015. Epub 2014 Apr 18.

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