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Integrated analysis of promoter methylation and expression of telomere related genes in breast cancer.

Heng J, Zhang F, Guo X, Tang L, Peng L, Luo X, Xu X, Wang S, Dai L, Wang J.

Oncotarget. 2017 Apr 11;8(15):25442-25454. doi: 10.18632/oncotarget.16036.


Anticancer Natural Compounds as Epigenetic Modulators of Gene Expression.

Ratovitski EA.

Curr Genomics. 2017 Apr;18(2):175-205. doi: 10.2174/1389202917666160803165229. Review.


Septin 9_i2 is downregulated in tumors, impairs cancer cell migration and alters subnuclear actin filaments.

Verdier-Pinard P, Salaun D, Bouguenina H, Shimada S, Pophillat M, Audebert S, Agavnian E, Coslet S, Charafe-Jauffret E, Tachibana T, Badache A.

Sci Rep. 2017 Mar 24;7:44976. doi: 10.1038/srep44976.


Three-dimensional culture system identifies a new mode of cetuximab resistance and disease-relevant genes in colorectal cancer.

Li C, Singh B, Graves-Deal R, Ma H, Starchenko A, Fry WH, Lu Y, Wang Y, Bogatcheva G, Khan MP, Milne GL, Zhao S, Ayers GD, Li N, Hu H, Washington MK, Yeatman TJ, McDonald OG, Liu Q, Coffey RJ.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2852-E2861. doi: 10.1073/pnas.1618297114. Epub 2017 Mar 20.


Epigenetic and genetic alterations and their influence on gene regulation in chronic lymphocytic leukemia.

Huang D, Ovcharenko I.

BMC Genomics. 2017 Mar 16;18(1):236. doi: 10.1186/s12864-017-3617-6.


Integrated analysis of promoter mutation, methylation and expression of AKT1 gene in Chinese breast cancer patients.

Heng J, Guo X, Wu W, Wang Y, Li G, Chen M, Peng L, Wang S, Dai L, Tang L, Wang J.

PLoS One. 2017 Mar 16;12(3):e0174022. doi: 10.1371/journal.pone.0174022. eCollection 2017.


Locus- and cell type-specific epigenetic switching during cellular differentiation in mammals.

Zhao YT, Fasolino M, Zhou Z.

Front Biol (Beijing). 2016 Aug;11(4):311-322. doi: 10.1007/s11515-016-1411-5. Epub 2016 Jul 18.


Critical threshold levels of DNA methyltransferase 1 are required to maintain DNA methylation across the genome in human cancer cells.

Cai Y, Tsai HC, Yen RC, Zhang YW, Kong X, Wang W, Xia L, Baylin SB.

Genome Res. 2017 Apr;27(4):533-544. doi: 10.1101/gr.208108.116. Epub 2017 Feb 23.


The Ageing Brain: Effects on DNA Repair and DNA Methylation in Mice.

Langie SA, Cameron KM, Ficz G, Oxley D, Tomaszewski B, Gorniak JP, Maas LM, Godschalk RW, van Schooten FJ, Reik W, von Zglinicki T, Mathers JC.

Genes (Basel). 2017 Feb 17;8(2). pii: E75. doi: 10.3390/genes8020075.


Small genomic insertions form enhancers that misregulate oncogenes.

Abraham BJ, Hnisz D, Weintraub AS, Kwiatkowski N, Li CH, Li Z, Weichert-Leahey N, Rahman S, Liu Y, Etchin J, Li B, Shen S, Lee TI, Zhang J, Look AT, Mansour MR, Young RA.

Nat Commun. 2017 Feb 9;8:14385. doi: 10.1038/ncomms14385.


Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines.

Chae H, Lee S, Nephew KP, Kim S.

BMC Syst Biol. 2016 Dec 23;10(Suppl 4):116. doi: 10.1186/s12918-016-0356-2.


Body-hypomethylated human genes harbor extensive intragenic transcriptional activity and are prone to cancer-associated dysregulation.

Mendizabal I, Zeng J, Keller TE, Yi SV.

Nucleic Acids Res. 2017 May 5;45(8):4390-4400. doi: 10.1093/nar/gkx020.


Whole-Genome DNA Methylation Profiling Identifies Epigenetic Signatures of Uterine Carcinosarcoma.

Li J, Xing X, Li D, Zhang B, Mutch DG, Hagemann IS, Wang T.

Neoplasia. 2017 Feb;19(2):100-111. doi: 10.1016/j.neo.2016.12.009. Epub 2017 Jan 12.


Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.

Toh H, Shirane K, Miura F, Kubo N, Ichiyanagi K, Hayashi K, Saitou M, Suyama M, Ito T, Sasaki H.

BMC Genomics. 2017 Jan 5;18(1):31. doi: 10.1186/s12864-016-3392-9.


Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net.

Zhang L, Liu H, Huang Y, Wang X, Chen Y, Meng J.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Dec 23. doi: 10.1109/TCBB.2015.2511758. [Epub ahead of print]


The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells.

Jordà M, Díez-Villanueva A, Mallona I, Martín B, Lois S, Barrera V, Esteller M, Vavouri T, Peinado MA.

Genome Res. 2017 Jan;27(1):118-132. doi: 10.1101/gr.207522.116. Epub 2016 Dec 20.


Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism.

Mehrmohamadi M, Mentch LK, Clark AG, Locasale JW.

Nat Commun. 2016 Dec 14;7:13666. doi: 10.1038/ncomms13666.


DNA Methylation of PITX2 and PANCR Is Prognostic for Overall Survival in Patients with Resected Adenocarcinomas of the Biliary Tract.

Uhl B, Dietrich D, Branchi V, Semaan A, Schaefer P, Gevensleben H, Rostamzadeh B, Lingohr P, Schäfer N, Kalff JC, Kristiansen G, Matthaei H.

PLoS One. 2016 Oct 31;11(10):e0165769. doi: 10.1371/journal.pone.0165769. eCollection 2016.


DNA Methylation Patterns in Rat Mammary Carcinomas Induced by Pre- and Post-Pubertal Irradiation.

Takabatake M, Blyth BJ, Daino K, Imaoka T, Nishimura M, Fukushi M, Shimada Y.

PLoS One. 2016 Oct 6;11(10):e0164194. doi: 10.1371/journal.pone.0164194. eCollection 2016.


Cancer Biomarkers from Genome-Scale DNA Methylation: Comparison of Evolutionary and Semantic Analysis Methods.

Valavanis I, Pilalis E, Georgiadis P, Kyrtopoulos S, Chatziioannou A.

Microarrays (Basel). 2015 Nov 27;4(4):647-70. doi: 10.3390/microarrays4040647.

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