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Items: 1 to 20 of 49

1.

Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas euvesicatoria.

Abendroth U, Adlung N, Otto A, Grüneisen B, Becher D, Bonas U.

BMC Genomics. 2017 Aug 16;18(1):625. doi: 10.1186/s12864-017-4041-7.

2.

Proteogenomic Analysis and Discovery of Immune Antigens in Mycobacterium vaccae.

Zheng J, Chen L, Liu L, Li H, Liu B, Zheng D, Liu T, Dong J, Sun L, Zhu Y, Yang J, Zhang X, Jin Q.

Mol Cell Proteomics. 2017 Sep;16(9):1578-1590. doi: 10.1074/mcp.M116.065813. Epub 2017 Jul 21.

PMID:
28733429
3.

Translational Control of the SigR-Directed Oxidative Stress Response in Streptomyces via IF3-Mediated Repression of a Noncanonical GTC Start Codon.

Feeney MA, Chandra G, Findlay KC, Paget MSB, Buttner MJ.

MBio. 2017 Jun 13;8(3). pii: e00815-17. doi: 10.1128/mBio.00815-17.

4.

Comparative Proteomic Analysis of Mycobacterium tuberculosis Lineage 7 and Lineage 4 Strains Reveals Differentially Abundant Proteins Linked to Slow Growth and Virulence.

Yimer SA, Birhanu AG, Kalayou S, Riaz T, Zegeye ED, Beyene GT, Holm-Hansen C, Norheim G, Abebe M, Aseffa A, Tønjum T.

Front Microbiol. 2017 May 9;8:795. doi: 10.3389/fmicb.2017.00795. eCollection 2017.

5.

Proteomics for the Investigation of Mycobacteria.

Bespyatykh JA, Shitikov EA, Ilina EN.

Acta Naturae. 2017 Jan-Mar;9(1):15-25.

6.

The alr-groEL1 operon in Mycobacterium tuberculosis: an interplay of multiple regulatory elements.

Bhat AH, Pathak D, Rao A.

Sci Rep. 2017 Mar 3;7:43772. doi: 10.1038/srep43772.

7.

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes.

Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, Jiang X, Peery A, Rajagopalan P, Yelamanchi SD, Solanki HS, Raja R, Sathe GJ, Chavan S, Verma R, Patel KM, Jain AP, Syed N, Datta KK, Khan AA, Dammalli M, Jayaram S, Radhakrishnan A, Mitchell CJ, Na CH, Kumar N, Sinnis P, Sharakhov IV, Wang C, Gowda H, Tu Z, Kumar A, Pandey A.

Genome Res. 2017 Jan;27(1):133-144. doi: 10.1101/gr.201368.115. Epub 2016 Nov 15.

8.

GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes.

Zhang J, Yang MK, Zeng H, Ge F.

Mol Cell Proteomics. 2016 Nov;15(11):3529-3539. Epub 2016 Sep 14.

PMID:
27630248
9.

Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis.

Pathak D, Bhat AH, Sapehia V, Rai J, Rao A.

Sci Rep. 2016 Jun 29;6:28892. doi: 10.1038/srep28892.

10.

Structural characterization of CYP144A1 - a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis.

Chenge J, Kavanagh ME, Driscoll MD, McLean KJ, Young DB, Cortes T, Matak-Vinkovic D, Levy CW, Rigby SE, Leys D, Abell C, Munro AW.

Sci Rep. 2016 May 26;6:26628. doi: 10.1038/srep26628.

11.

Comparative Proteomic Analyses of Avirulent, Virulent, and Clinical Strains of Mycobacterium tuberculosis Identify Strain-specific Patterns.

Jhingan GD, Kumari S, Jamwal SV, Kalam H, Arora D, Jain N, Kumaar LK, Samal A, Rao KV, Kumar D, Nandicoori VK.

J Biol Chem. 2016 Jul 1;291(27):14257-73. doi: 10.1074/jbc.M115.666123. Epub 2016 May 5.

12.

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry.

Potgieter MG, Nakedi KC, Ambler JM, Nel AJ, Garnett S, Soares NC, Mulder N, Blackburn JM.

Front Microbiol. 2016 Apr 5;7:427. doi: 10.3389/fmicb.2016.00427. eCollection 2016.

13.

Mycobacterium tuberculosis Zinc Metalloprotease-1 Elicits Tuberculosis-Specific Humoral Immune Response Independent of Mycobacterial Load in Pulmonary and Extra-Pulmonary Tuberculosis Patients.

Vemula MH, Ganji R, Sivangala R, Jakkala K, Gaddam S, Penmetsa S, Banerjee S.

Front Microbiol. 2016 Mar 31;7:418. doi: 10.3389/fmicb.2016.00418. eCollection 2016.

14.

Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline.

Zhu X, Xie S, Armengaud J, Xie W, Guo Z, Kang S, Wu Q, Wang S, Xia J, He R, Zhang Y.

Mol Cell Proteomics. 2016 Jun;15(6):1791-807. doi: 10.1074/mcp.M115.050989. Epub 2016 Feb 22.

15.

A multi-omic analysis of human naïve CD4+ T cells.

Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, Sahasrabuddhe NA, Raju R, Bowman C, Danilova L, Cutler J, Kelkar DS, Drake CG, Prasad TS, Marchionni L, Murakami PN, Scott AF, Shi L, Thierry-Mieg J, Thierry-Mieg D, Irizarry R, Cope L, Ishihama Y, Wang C, Gowda H, Pandey A.

BMC Syst Biol. 2015 Nov 6;9:75. doi: 10.1186/s12918-015-0225-4.

16.

Mycobacterial tlyA gene product is localized to the cell-wall without signal sequence.

Kumar S, Mittal E, Deore S, Kumar A, Rahman A, Krishnasastry MV.

Front Cell Infect Microbiol. 2015 Aug 21;5:60. doi: 10.3389/fcimb.2015.00060. eCollection 2015.

17.

Selective enrichment of mycobacterial proteins from infected host macrophages.

Chande AG, Siddiqui Z, Midha MK, Sirohi V, Ravichandran S, Rao KV.

Sci Rep. 2015 Aug 25;5:13430. doi: 10.1038/srep13430.

18.

A note on the false discovery rate of novel peptides in proteogenomics.

Zhang K, Fu Y, Zeng WF, He K, Chi H, Liu C, Li YC, Gao Y, Xu P, He SM.

Bioinformatics. 2015 Oct 15;31(20):3249-53. doi: 10.1093/bioinformatics/btv340. Epub 2015 Jun 14.

19.

MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms.

Zickmann F, Renard BY.

Bioinformatics. 2015 Jun 15;31(12):i106-15. doi: 10.1093/bioinformatics/btv236.

20.

Profiling the Proteome of Mycobacterium tuberculosis during Dormancy and Reactivation.

Gopinath V, Raghunandanan S, Gomez RL, Jose L, Surendran A, Ramachandran R, Pushparajan AR, Mundayoor S, Jaleel A, Kumar RA.

Mol Cell Proteomics. 2015 Aug;14(8):2160-76. doi: 10.1074/mcp.M115.051151. Epub 2015 May 29.

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