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Items: 1 to 20 of 23

1.

Expression and Regulation Profile of Mature MicroRNA in the Pig: Relevance to Xenotransplantation.

Song Z, Cooper DKC, Cai Z, Mou L.

Biomed Res Int. 2018 Mar 21;2018:2983908. doi: 10.1155/2018/2983908. eCollection 2018. Review.

2.

EXPath tool-a system for comprehensively analyzing regulatory pathways and coexpression networks from high-throughput transcriptome data.

Zheng HQ, Wu NY, Chow CN, Tseng KC, Chien CH, Hung YC, Li GZ, Chang WC.

DNA Res. 2017 Aug 1;24(4):371-375. doi: 10.1093/dnares/dsx009.

3.

CPSS 2.0: a computational platform update for the analysis of small RNA sequencing data.

Wan C, Gao J, Zhang H, Jiang X, Zang Q, Ban R, Zhang Y, Shi Q.

Bioinformatics. 2017 Oct 15;33(20):3289-3291. doi: 10.1093/bioinformatics/btx066.

4.

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.

Gan RC, Chen TW, Wu TH, Huang PJ, Lee CC, Yeh YM, Chiu CH, Huang HD, Tang P.

BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):513. doi: 10.1186/s12859-016-1366-1.

5.

SePIA: RNA and small RNA sequence processing, integration, and analysis.

Icay K, Chen P, Cervera A, Rantanen V, Lehtonen R, Hautaniemi S.

BioData Min. 2016 May 20;9:20. doi: 10.1186/s13040-016-0099-z. eCollection 2016.

6.

miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.

Andrés-León E, Núñez-Torres R, Rojas AM.

Sci Rep. 2016 May 11;6:25749. doi: 10.1038/srep25749. Erratum in: Sci Rep. 2018 Jan 08;8:46928.

8.

Differential Expression of Hepatic Genes of the Greater Horseshoe Bat (Rhinolophus ferrumequinum) between the Summer Active and Winter Torpid States.

Xiao Y, Wu Y, Sun K, Wang H, Zhang B, Song S, Du Z, Jiang T, Shi L, Wang L, Lin A, Yue X, Li C, Chen T, Feng J.

PLoS One. 2015 Dec 23;10(12):e0145702. doi: 10.1371/journal.pone.0145702. eCollection 2015.

9.

Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.

Wang XL, Song SH, Wu YS, Li YL, Chen TT, Huang ZY, Liu S, Dunwell TL, Pfeifer GP, Dunwell JM, Wamaedeesa R, Ullah I, Wang Y, Hu SN.

J Exp Bot. 2015 Nov;66(21):6651-63. doi: 10.1093/jxb/erv372. Epub 2015 Aug 13.

10.

miFRame: analysis and visualization of miRNA sequencing data in neurological disorders.

Backes C, Haas J, Leidinger P, Frese K, Großmann T, Ruprecht K, Meder B, Meese E, Keller A.

J Transl Med. 2015 Jul 14;13:224. doi: 10.1186/s12967-015-0594-x.

11.

Male- and Female-Biased Gene Expression of Olfactory-Related Genes in the Antennae of Asian Corn Borer, Ostrinia furnacalis (Guenée) (Lepidoptera: Crambidae).

Zhang T, Coates BS, Ge X, Bai S, He K, Wang Z.

PLoS One. 2015 Jun 10;10(6):e0128550. doi: 10.1371/journal.pone.0128550. eCollection 2015.

13.

Characterization and comparative profiling of ovarian microRNAs during ovine anestrus and the breeding season.

Di R, He J, Song S, Tian D, Liu Q, Liang X, Ma Q, Sun M, Wang J, Zhao W, Cao G, Wang J, Yang Z, Ge Y, Chu M.

BMC Genomics. 2014 Oct 15;15:899. doi: 10.1186/1471-2164-15-899.

14.

Integrated transcriptomic and proteomic analysis of the bile stress response in a centenarian-originated probiotic Bifidobacterium longum BBMN68.

An H, Douillard FP, Wang G, Zhai Z, Yang J, Song S, Cui J, Ren F, Luo Y, Zhang B, Hao Y.

Mol Cell Proteomics. 2014 Oct;13(10):2558-72. doi: 10.1074/mcp.M114.039156. Epub 2014 Jun 25.

15.

MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure.

Kim J, Levy E, Ferbrache A, Stepanowsky P, Farcas C, Wang S, Brunner S, Bath T, Wu Y, Ohno-Machado L.

Bioinformatics. 2014 Oct;30(19):2826-7. doi: 10.1093/bioinformatics/btu377. Epub 2014 Jun 6.

16.

CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data.

Sun Z, Evans J, Bhagwate A, Middha S, Bockol M, Yan H, Kocher JP.

BMC Genomics. 2014 Jun 3;15:423. doi: 10.1186/1471-2164-15-423.

17.

WBSA: web service for bisulfite sequencing data analysis.

Liang F, Tang B, Wang Y, Wang J, Yu C, Chen X, Zhu J, Yan J, Zhao W, Li R.

PLoS One. 2014 Jan 30;9(1):e86707. doi: 10.1371/journal.pone.0086707. eCollection 2014.

18.

Redox-active quinones induces genome-wide DNA methylation changes by an iron-mediated and Tet-dependent mechanism.

Zhao B, Yang Y, Wang X, Chong Z, Yin R, Song SH, Zhao C, Li C, Huang H, Sun BF, Wu D, Jin KX, Song M, Zhu BZ, Jiang G, Rendtlew Danielsen JM, Xu GL, Yang YG, Wang H.

Nucleic Acids Res. 2014 Feb;42(3):1593-605. doi: 10.1093/nar/gkt1090. Epub 2013 Nov 8.

19.

Comparative transcriptome profiling reveals different expression patterns in Xanthomonas oryzae pv. oryzae strains with putative virulence-relevant genes.

Zhang F, Du Z, Huang L, Vera Cruz C, Zhou Y, Li Z.

PLoS One. 2013 May 29;8(5):e64267. doi: 10.1371/journal.pone.0064267. Print 2013.

20.

Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut.

Bizuayehu TT, Fernandes JM, Johansen SD, Babiak I.

PLoS One. 2013 Apr 23;8(4):e61378. doi: 10.1371/journal.pone.0061378. Print 2013.

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