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Items: 1 to 20 of 103


Disease onset in X-linked dystonia-parkinsonism correlates with expansion of a hexameric repeat within an SVA retrotransposon in TAF1.

Bragg DC, Mangkalaphiban K, Vaine CA, Kulkarni NJ, Shin D, Yadav R, Dhakal J, Ton ML, Cheng A, Russo CT, Ang M, Acuña P, Go C, Franceour TN, Multhaupt-Buell T, Ito N, Müller U, Hendriks WT, Breakefield XO, Sharma N, Ozelius LJ.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E11020-E11028. doi: 10.1073/pnas.1712526114. Epub 2017 Dec 11.


Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection.

Yu Q, Zhang W, Zhang X, Zeng Y, Wang Y, Wang Y, Xu L, Huang X, Li N, Zhou X, Lu J, Guo X, Li G, Hou Y, Liu S, Li B.

Gigascience. 2017 Sep 1;6(9):1-11. doi: 10.1093/gigascience/gix066.


The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology.

Gardner EJ, Lam VK, Harris DN, Chuang NT, Scott EC, Pittard WS, Mills RE; 1000 Genomes Project Consortium, Devine SE.

Genome Res. 2017 Nov;27(11):1916-1929. doi: 10.1101/gr.218032.116. Epub 2017 Aug 30.


Discovery of rare, diagnostic AluYb8/9 elements in diverse human populations.

Feusier J, Witherspoon DJ, Scott Watkins W, Goubert C, Sasani TA, Jorde LB.

Mob DNA. 2017 Jul 27;8:9. doi: 10.1186/s13100-017-0093-0. eCollection 2017.


GINOM: A statistical framework for assessing interval overlap of multiple genomic features.

Bryner D, Criscione S, Leith A, Huynh Q, Huffer F, Neretti N.

PLoS Comput Biol. 2017 Jun 15;13(6):e1005586. doi: 10.1371/journal.pcbi.1005586. eCollection 2017 Jun.


Reading LINEs within the cocaine addicted brain.

Doyle GA, Doucet-O'Hare TT, Hammond MJ, Crist RC, Ewing AD, Ferraro TN, Mash DC, Kazazian HH Jr, Berrettini WH.

Brain Behav. 2017 Apr 6;7(5):e00678. doi: 10.1002/brb3.678. eCollection 2017 May.


Structural variants caused by Alu insertions are associated with risks for many human diseases.

Payer LM, Steranka JP, Yang WR, Kryatova M, Medabalimi S, Ardeljan D, Liu C, Boeke JD, Avramopoulos D, Burns KH.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3984-E3992. doi: 10.1073/pnas.1704117114. Epub 2017 May 2.


Insertion and deletion polymorphisms of the ancient AluS family in the human genome.

Kryatova MS, Steranka JP, Burns KH, Payer LM.

Mob DNA. 2017 Apr 24;8:6. doi: 10.1186/s13100-017-0089-9. eCollection 2017.


LINE Insertion Polymorphisms are Abundant but at Low Frequencies across Populations of Anolis carolinensis.

Ruggiero RP, Bourgeois Y, Boissinot S.

Front Genet. 2017 Apr 13;8:44. doi: 10.3389/fgene.2017.00044. eCollection 2017.


Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network.

McConnell MJ, Moran JV, Abyzov A, Akbarian S, Bae T, Cortes-Ciriano I, Erwin JA, Fasching L, Flasch DA, Freed D, Ganz J, Jaffe AE, Kwan KY, Kwon M, Lodato MA, Mills RE, Paquola ACM, Rodin RE, Rosenbluh C, Sestan N, Sherman MA, Shin JH, Song S, Straub RE, Thorpe J, Weinberger DR, Urban AE, Zhou B, Gage FH, Lehner T, Senthil G, Walsh CA, Chess A, Courchesne E, Gleeson JG, Kidd JM, Park PJ, Pevsner J, Vaccarino FM; Brain Somatic Mosaicism Network.

Science. 2017 Apr 28;356(6336). pii: eaal1641. doi: 10.1126/science.aal1641. Epub 2017 Apr 27. Review.


Population and clinical genetics of human transposable elements in the (post) genomic era.

Rishishwar L, Wang L, Clayton EA, Mariño-Ramírez L, McDonald JF, Jordan IK.

Mob Genet Elements. 2017 Jan 11;7(1):1-20. doi: 10.1080/2159256X.2017.1280116. eCollection 2017. Review.


RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing.

Chen J, Wrightsman TR, Wessler SR, Stajich JE.

PeerJ. 2017 Jan 26;5:e2942. doi: 10.7717/peerj.2942. eCollection 2017.


Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer.

Tang Z, Steranka JP, Ma S, Grivainis M, Rodić N, Huang CR, Shih IM, Wang TL, Boeke JD, Fenyö D, Burns KH.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E733-E740. doi: 10.1073/pnas.1619797114. Epub 2017 Jan 17.


Discovery and genotyping of structural variation from long-read haploid genome sequence data.

Huddleston J, Chaisson MJP, Steinberg KM, Warren W, Hoekzema K, Gordon D, Graves-Lindsay TA, Munson KM, Kronenberg ZN, Vives L, Peluso P, Boitano M, Chin CS, Korlach J, Wilson RK, Eichler EE.

Genome Res. 2017 May;27(5):677-685. doi: 10.1101/gr.214007.116. Epub 2016 Nov 28. Erratum in: Genome Res. 2018 Jan;28(1):144.


Somatic retrotransposition is infrequent in glioblastomas.

Achanta P, Steranka JP, Tang Z, Rodić N, Sharma R, Yang WR, Ma S, Grivainis M, Huang CRL, Schneider AM, Gallia GL, Riggins GJ, Quinones-Hinojosa A, Fenyö D, Boeke JD, Burns KH.

Mob DNA. 2016 Nov 11;7:22. doi: 10.1186/s13100-016-0077-5. eCollection 2016.


A map of mobile DNA insertions in the NCI-60 human cancer cell panel.

Zampella JG, Rodić N, Yang WR, Huang CR, Welch J, Gnanakkan VP, Cornish TC, Boeke JD, Burns KH.

Mob DNA. 2016 Oct 31;7:20. eCollection 2016.


The cancer-associated CTCFL/BORIS protein targets multiple classes of genomic repeats, with a distinct binding and functional preference for humanoid-specific SVA transposable elements.

Pugacheva EM, Teplyakov E, Wu Q, Li J, Chen C, Meng C, Liu J, Robinson S, Loukinov D, Boukaba A, Hutchins AP, Lobanenkov V, Strunnikov A.

Epigenetics Chromatin. 2016 Aug 31;9(1):35. doi: 10.1186/s13072-016-0084-2. eCollection 2016.


Forward genetic screen of human transposase genomic rearrangements.

Henssen AG, Jiang E, Zhuang J, Pinello L, Socci ND, Koche R, Gonen M, Villasante CM, Armstrong SA, Bauer DE, Weng Z, Kentsis A.

BMC Genomics. 2016 Aug 4;17:548. doi: 10.1186/s12864-016-2877-x.


Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA).

Ha H, Loh JW, Xing J.

Mob DNA. 2016 Jul 30;7:15. doi: 10.1186/s13100-016-0072-x. eCollection 2016.


When Genomics Is Not Enough: Experimental Evidence for a Decrease in LINE-1 Activity During the Evolution of Australian Marsupials.

Gallus S, Lammers F, Nilsson MA.

Genome Biol Evol. 2016 Aug 25;8(8):2406-12. doi: 10.1093/gbe/evw159.

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