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Items: 1 to 20 of 37

1.

Nothing in Evolution Makes Sense Except in the Light of Genomics: Read-Write Genome Evolution as an Active Biological Process.

Shapiro JA.

Biology (Basel). 2016 Jun 8;5(2). pii: E27. doi: 10.3390/biology5020027. Review.

2.

Origin and evolution of developmental enhancers in the mammalian neocortex.

Emera D, Yin J, Reilly SK, Gockley J, Noonan JP.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2617-26. doi: 10.1073/pnas.1603718113. Epub 2016 Apr 25.

3.

"Reverse Genomics" Predicts Function of Human Conserved Noncoding Elements.

Marcovitz A, Jia R, Bejerano G.

Mol Biol Evol. 2016 May;33(5):1358-69. doi: 10.1093/molbev/msw001. Epub 2016 Jan 6.

4.

A new paradigm for animal symmetry.

Holló G.

Interface Focus. 2015 Dec 6;5(6):20150032. doi: 10.1098/rsfs.2015.0032. Review.

5.

Populational landscape of INDELs affecting transcription factor-binding sites in humans.

Ribeiro-dos-Santos AM, da Silva VL, de Souza JE, de Souza SJ.

BMC Genomics. 2015 Jul 22;16:536. doi: 10.1186/s12864-015-1744-5.

6.

Comprehensive identification and analysis of human accelerated regulatory DNA.

Gittelman RM, Hun E, Ay F, Madeoy J, Pennacchio L, Noble WS, Hawkins RD, Akey JM.

Genome Res. 2015 Sep;25(9):1245-55. doi: 10.1101/gr.192591.115. Epub 2015 Jun 23.

7.

Variation in vertebrate cis-regulatory elements in evolution and disease.

Douglas AT, Hill RD.

Transcription. 2014;5(3):e28848. doi: 10.4161/trns.28848. Review.

8.

Feather development genes and associated regulatory innovation predate the origin of Dinosauria.

Lowe CB, Clarke JA, Baker AJ, Haussler D, Edwards SV.

Mol Biol Evol. 2015 Jan;32(1):23-8. doi: 10.1093/molbev/msu309. Epub 2014 Nov 18.

9.

The mutational landscape in pediatric acute lymphoblastic leukemia deciphered by whole genome sequencing.

Lindqvist CM, Nordlund J, Ekman D, Johansson A, Moghadam BT, Raine A, Övernäs E, Dahlberg J, Wahlberg P, Henriksson N, Abrahamsson J, Frost BM, Grandér D, Heyman M, Larsson R, Palle J, Söderhäll S, Forestier E, Lönnerholm G, Syvänen AC, Berglund EC.

Hum Mutat. 2015 Jan;36(1):118-28. doi: 10.1002/humu.22719.

10.

Tracing the evolution of lineage-specific transcription factor binding sites in a birth-death framework.

Yokoyama KD, Zhang Y, Ma J.

PLoS Comput Biol. 2014 Aug 21;10(8):e1003771. doi: 10.1371/journal.pcbi.1003771. eCollection 2014 Aug.

11.

A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo.

Braasch I, Peterson SM, Desvignes T, McCluskey BM, Batzel P, Postlethwait JH.

J Exp Zool B Mol Dev Evol. 2015 Jun;324(4):316-41. doi: 10.1002/jez.b.22589. Epub 2014 Aug 11. Review.

12.

8.2% of the Human genome is constrained: variation in rates of turnover across functional element classes in the human lineage.

Rands CM, Meader S, Ponting CP, Lunter G.

PLoS Genet. 2014 Jul 24;10(7):e1004525. doi: 10.1371/journal.pgen.1004525. eCollection 2014 Jul.

13.

Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast.

Ward LD, Wang J, Bussemaker HJ.

BMC Genomics. 2014 Jun 19;15:494. doi: 10.1186/1471-2164-15-494.

14.

Epigenetic control of mobile DNA as an interface between experience and genome change.

Shapiro JA.

Front Genet. 2014 Apr 25;5:87. doi: 10.3389/fgene.2014.00087. eCollection 2014. Review.

15.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

16.
17.

Encoding asymmetry of the N-glycosylation motif facilitates glycoprotein evolution.

Williams R, Ma X, Schott RK, Mohammad N, Ho CY, Li CF, Chang BS, Demetriou M, Dennis JW.

PLoS One. 2014 Jan 24;9(1):e86088. doi: 10.1371/journal.pone.0086088. eCollection 2014.

18.

Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents.

Halligan DL, Kousathanas A, Ness RW, Harr B, Eöry L, Keane TM, Adams DJ, Keightley PD.

PLoS Genet. 2013;9(12):e1003995. doi: 10.1371/journal.pgen.1003995. Epub 2013 Dec 5.

19.

The mystery of extreme non-coding conservation.

Harmston N, Baresic A, Lenhard B.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130021. doi: 10.1098/rstb.2013.0021. Print 2013 Dec 19. Review. Erratum in: Philos Trans R Soc Lond B Biol Sci. 2015 May 5;370(1667). pii: 20150064. doi: 10.1098/rstb.2015.0064.

20.

Evolution of transcriptional enhancers and animal diversity.

Rubinstein M, de Souza FS.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130017. doi: 10.1098/rstb.2013.0017. Print 2013 Dec 19.

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