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Rare Splice Variants in Long Non-Coding RNAs.

Sen R, Doose G, Stadler PF.

Noncoding RNA. 2017 Jul 5;3(3). pii: E23. doi: 10.3390/ncrna3030023.


The "dark matter" of DNA and the regulation of bone metabolism: The role of non-coding RNAs.

Yavropoulou MP, Yovos JG.

J Musculoskelet Neuronal Interact. 2018 Mar 1;18(1):18-31.


Transcriptional-Readthrough RNAs Reflect the Phenomenon of "A Gene Contains Gene(s)" or "Gene(s) within a Gene" in the Human Genome, and Thus Are Not Chimeric RNAs.

He Y, Yuan C, Chen L, Lei M, Zellmer L, Huang H, Liao DJ.

Genes (Basel). 2018 Jan 16;9(1). pii: E40. doi: 10.3390/genes9010040. Review.


Transcriptional interference by small transcripts in proximal promoter regions.

Pande A, Brosius J, Makalowska I, Makalowski W, Raabe CA.

Nucleic Acids Res. 2018 Feb 16;46(3):1069-1088. doi: 10.1093/nar/gkx1242.


Ensemble Modeling Approach Targeting Heterogeneous RNA-Seq data: Application to Melanoma Pseudogenes.

Capobianco E, Valdes C, Sarti S, Jiang Z, Poliseno L, Tsinoremas NF.

Sci Rep. 2017 Dec 11;7(1):17344. doi: 10.1038/s41598-017-17337-7.


A comprehensive profile of circulating RNAs in human serum.

Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB.

RNA Biol. 2018 Feb 1;15(2):242-250. doi: 10.1080/15476286.2017.1403003. Epub 2017 Dec 8.


Native elongating transcript sequencing reveals global anti-correlation between sense and antisense nascent transcription in fission yeast.

Wery M, Gautier C, Descrimes M, Yoda M, Vennin-Rendos H, Migeot V, Gautheret D, Hermand D, Morillon A.

RNA. 2018 Feb;24(2):196-208. doi: 10.1261/rna.063446.117. Epub 2017 Nov 7.


Cocaine alters Homer1 natural antisense transcript in the nucleus accumbens.

Sartor GC, Powell SK, Velmeshev D, Lin DY, Magistri M, Wiedner HJ, Malvezzi AM, Andrade NS, Faghihi MA, Wahlestedt C.

Mol Cell Neurosci. 2017 Dec;85:183-189. doi: 10.1016/j.mcn.2017.10.003. Epub 2017 Oct 18.


A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts.

Schneider HW, Raiol T, Brigido MM, Walter MEMT, Stadler PF.

BMC Genomics. 2017 Oct 18;18(1):804. doi: 10.1186/s12864-017-4178-4.


An analysis of 67 RNA-seq datasets from various tissues at different stages of a model insect, Manduca sexta.

Cao X, Jiang H.

BMC Genomics. 2017 Oct 17;18(1):796. doi: 10.1186/s12864-017-4147-y.


The yeast noncoding RNA interaction network.

Panni S, Prakash A, Bateman A, Orchard S.

RNA. 2017 Oct;23(10):1479-1492. doi: 10.1261/rna.060996.117. Epub 2017 Jul 12.


RNA Binding Proteins and Genome Integrity.

Nishida K, Kuwano Y, Nishikawa T, Masuda K, Rokutan K.

Int J Mol Sci. 2017 Jun 23;18(7). pii: E1341. doi: 10.3390/ijms18071341. Review.


Similar Ratios of Introns to Intergenic Sequence across Animal Genomes.

Francis WR, Wörheide G.

Genome Biol Evol. 2017 Jun 1;9(6):1582-1598. doi: 10.1093/gbe/evx103.


An essential domain of an early-diverged RNA polymerase II functions to accurately decode a primitive chromatin landscape.

Das A, Banday M, Fisher MA, Chang YJ, Rosenfeld J, Bellofatto V.

Nucleic Acids Res. 2017 Jul 27;45(13):7886-7896. doi: 10.1093/nar/gkx486.


Genome annotation for clinical genomic diagnostics: strengths and weaknesses.

Steward CA, Parker APJ, Minassian BA, Sisodiya SM, Frankish A, Harrow J.

Genome Med. 2017 May 30;9(1):49. doi: 10.1186/s13073-017-0441-1. Review.


Mining for Micropeptides.

Makarewich CA, Olson EN.

Trends Cell Biol. 2017 Sep;27(9):685-696. doi: 10.1016/j.tcb.2017.04.006. Epub 2017 May 18. Review.


Small Luggage for a Long Journey: Transfer of Vesicle-Enclosed Small RNA in Interspecies Communication.

Lefebvre FA, Lécuyer E.

Front Microbiol. 2017 Mar 16;8:377. doi: 10.3389/fmicb.2017.00377. eCollection 2017. Review.


The lncRNA VELUCT strongly regulates viability of lung cancer cells despite its extremely low abundance.

Seiler J, Breinig M, Caudron-Herger M, Polycarpou-Schwarz M, Boutros M, Diederichs S.

Nucleic Acids Res. 2017 May 19;45(9):5458-5469. doi: 10.1093/nar/gkx076.


Pancreatic Cancer, A Mis-interpreter of the Epigenetic Language.

Iguchi E, Safgren SL, Marks DL, Olson RL, Fernandez-Zapico ME.

Yale J Biol Med. 2016 Dec 23;89(4):575-590. eCollection 2016 Dec. Review.


Biogenesis and Transcriptional Regulation of Long Noncoding RNAs in the Human Immune System.

Spurlock CF 3rd, Crooke PS 3rd, Aune TM.

J Immunol. 2016 Dec 15;197(12):4509-4517. Review.

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