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Evolution of the 3-hydroxypropionate bicycle and recent transfer of anoxygenic photosynthesis into the Chloroflexi.

Shih PM, Ward LM, Fischer WW.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10749-10754. doi: 10.1073/pnas.1710798114. Epub 2017 Sep 18.


Differences in Temperature and Water Chemistry Shape Distinct Diversity Patterns in Thermophilic Microbial Communities.

Chiriac CM, Szekeres E, Rudi K, Baricz A, Hegedus A, Dragoş N, Coman C.

Appl Environ Microbiol. 2017 Oct 17;83(21). pii: e01363-17. doi: 10.1128/AEM.01363-17. Print 2017 Nov 1.


Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes.

DeCastro ME, Rodríguez-Belmonte E, González-Siso MI.

Front Microbiol. 2016 Sep 27;7:1521. eCollection 2016. Review.


Identification and Regulation of Genes for Cobalamin Transport in the Cyanobacterium Synechococcus sp. Strain PCC 7002.

Pérez AA, Rodionov DA, Bryant DA.

J Bacteriol. 2016 Sep 9;198(19):2753-61. doi: 10.1128/JB.00476-16. Print 2016 Oct 1.


Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.

Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO.

ISME J. 2017 Jan;11(1):201-211. doi: 10.1038/ismej.2016.93. Epub 2016 Jul 8.


The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing.

Thiel V, Wood JM, Olsen MT, Tank M, Klatt CG, Ward DM, Bryant DA.

Front Microbiol. 2016 Jun 17;7:919. doi: 10.3389/fmicb.2016.00919. eCollection 2016.


In Situ Hydrogen Dynamics in a Hot Spring Microbial Mat during a Diel Cycle.

Revsbech NP, Trampe E, Lichtenberg M, Ward DM, Kühl M.

Appl Environ Microbiol. 2016 Jun 30;82(14):4209-17. doi: 10.1128/AEM.00710-16. Print 2016 Jul 15.


Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat.

Melendrez MC, Becraft ED, Wood JM, Olsen MT, Bryant DA, Heidelberg JF, Rusch DB, Cohan FM, Ward DM.

Front Microbiol. 2016 Jan 14;6:1540. doi: 10.3389/fmicb.2015.01540. eCollection 2015.


Single-Cell-Genomics-Facilitated Read Binning of Candidate Phylum EM19 Genomes from Geothermal Spring Metagenomes.

Becraft ED, Dodsworth JA, Murugapiran SK, Ohlsson JI, Briggs BR, Kanbar J, De Vlaminck I, Quake SR, Dong H, Hedlund BP, Swingley WD.

Appl Environ Microbiol. 2015 Dec 4;82(4):992-1003. doi: 10.1128/AEM.03140-15.


The role of biology in planetary evolution: cyanobacterial primary production in low-oxygen Proterozoic oceans.

Hamilton TL, Bryant DA, Macalady JL.

Environ Microbiol. 2016 Feb;18(2):325-40. doi: 10.1111/1462-2920.13118. Epub 2015 Dec 21. Review.


New Technologies for Studying Biofilms.

Franklin MJ, Chang C, Akiyama T, Bothner B.

Microbiol Spectr. 2015 Aug;3(4). doi: 10.1128/microbiolspec.MB-0016-2014. Review.


The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

Olsen MT, Nowack S, Wood JM, Becraft ED, LaButti K, Lipzen A, Martin J, Schackwitz WS, Rusch DB, Cohan FM, Bryant DA, Ward DM.

Front Microbiol. 2015 Jun 23;6:604. doi: 10.3389/fmicb.2015.00604. eCollection 2015.


The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park.

Becraft ED, Wood JM, Rusch DB, Kühl M, Jensen SI, Bryant DA, Roberts DW, Cohan FM, Ward DM.

Front Microbiol. 2015 Jun 22;6:590. doi: 10.3389/fmicb.2015.00590. eCollection 2015.


Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms.

Kim YM, Nowack S, Olsen MT, Becraft ED, Wood JM, Thiel V, Klapper I, Kühl M, Fredrickson JK, Bryant DA, Ward DM, Metz TO.

Front Microbiol. 2015 Apr 17;6:209. doi: 10.3389/fmicb.2015.00209. eCollection 2015.


A fresh look at the evolution and diversification of photochemical reaction centers.

Cardona T.

Photosynth Res. 2015 Oct;126(1):111-34. doi: 10.1007/s11120-014-0065-x. Epub 2014 Dec 16. Review.


Hot spring metagenomics.

López-López O, Cerdán ME, González-Siso MI.

Life (Basel). 2013 Apr 25;3(2):308-20. doi: 10.3390/life3020308. Review.


Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution.

Alsop EB, Boyd ES, Raymond J.

BMC Ecol. 2014 May 28;14:16. doi: 10.1186/1472-6785-14-16.


Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.

Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR.

Front Microbiol. 2014 Apr 7;5:109. doi: 10.3389/fmicb.2014.00109. eCollection 2014.

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