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Items: 1 to 20 of 211

1.

Size-tagged preferred ends in maternal plasma DNA shed light on the production mechanism and show utility in noninvasive prenatal testing.

Sun K, Jiang P, Wong AIC, Cheng YKY, Cheng SH, Zhang H, Chan KCA, Leung TY, Chiu RWK, Lo YMD.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5106-E5114. doi: 10.1073/pnas.1804134115. Epub 2018 May 14.

2.

Epigenomics: Technologies and Applications.

Wang KC, Chang HY.

Circ Res. 2018 Apr 27;122(9):1191-1199. doi: 10.1161/CIRCRESAHA.118.310998. Review.

PMID:
29700067
3.

Human CHD1 is required for early DNA-damage signaling and is uniquely regulated by its N terminus.

Zhou J, Li J, Serafim RB, Ketchum S, Ferreira CG, Liu JC, Coe KA, Price BD, Yusufzai T.

Nucleic Acids Res. 2018 May 4;46(8):3891-3905. doi: 10.1093/nar/gky128.

4.

The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output.

Bulut-Karslioglu A, Macrae TA, Oses-Prieto JA, Covarrubias S, Percharde M, Ku G, Diaz A, McManus MT, Burlingame AL, Ramalho-Santos M.

Cell Stem Cell. 2018 Mar 1;22(3):369-383.e8. doi: 10.1016/j.stem.2018.02.004.

PMID:
29499153
5.

Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression.

Zhang Q, Oh DH, DiTusa SF, RamanaRao MV, Baisakh N, Dassanayake M, Smith AP.

BMC Genomics. 2018 Jan 26;19(1):97. doi: 10.1186/s12864-017-4397-8.

6.

LeNup: learning nucleosome positioning from DNA sequences with improved convolutional neural networks.

Zhang J, Peng W, Wang L.

Bioinformatics. 2018 May 15;34(10):1705-1712. doi: 10.1093/bioinformatics/bty003.

7.

The coupled effect of nucleosome organization on gene transcription level and transcriptional plasticity.

Chen J, Li E, Lai J.

Nucleus. 2017 Nov 2;8(6):605-612. doi: 10.1080/19491034.2017.1402152.

PMID:
29202635
8.

Resetting the Yeast Epigenome with Human Nucleosomes.

Truong DM, Boeke JD.

Cell. 2017 Dec 14;171(7):1508-1519.e13. doi: 10.1016/j.cell.2017.10.043. Epub 2017 Nov 30.

PMID:
29198523
9.

Modulation of the functional association between the HIV-1 intasome and the nucleosome by histone amino-terminal tails.

Benleulmi MS, Matysiak J, Robert X, Miskey C, Mauro E, Lapaillerie D, Lesbats P, Chaignepain S, Henriquez DR, Calmels C, Oladosu O, Thierry E, Leon O, Lavigne M, Andreola ML, Delelis O, Ivics Z, Ruff M, Gouet P, Parissi V.

Retrovirology. 2017 Nov 28;14(1):54. doi: 10.1186/s12977-017-0378-x.

10.

Single-molecule compaction of megabase-long chromatin molecules by multivalent cations.

Zinchenko A, Berezhnoy NV, Wang S, Rosencrans WM, Korolev N, van der Maarel JRC, Nordenskiƶld L.

Nucleic Acids Res. 2018 Jan 25;46(2):635-649. doi: 10.1093/nar/gkx1135.

11.

In silico evidence for sequence-dependent nucleosome sliding.

Lequieu J, Schwartz DC, de Pablo JJ.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9197-E9205. doi: 10.1073/pnas.1705685114. Epub 2017 Oct 18.

12.

N6-adenine DNA methylation is associated with the linker DNA of H2A.Z-containing well-positioned nucleosomes in Pol II-transcribed genes in Tetrahymena.

Wang Y, Chen X, Sheng Y, Liu Y, Gao S.

Nucleic Acids Res. 2017 Nov 16;45(20):11594-11606. doi: 10.1093/nar/gkx883.

13.

Regulation of chromatin folding by conformational variations of nucleosome linker DNA.

Buckwalter JM, Norouzi D, Harutyunyan A, Zhurkin VB, Grigoryev SA.

Nucleic Acids Res. 2017 Sep 19;45(16):9372-9387. doi: 10.1093/nar/gkx562.

14.

Hypomethylated domain-enriched DNA motifs prepattern the accessible nucleosome organization in teleosts.

Nakamura R, Uno A, Kumagai M, Morishita S, Takeda H.

Epigenetics Chromatin. 2017 Sep 20;10(1):44. doi: 10.1186/s13072-017-0152-2.

15.

p53 binding sites in normal and cancer cells are characterized by distinct chromatin context.

Bao F, LoVerso PR, Fisk JN, Zhurkin VB, Cui F.

Cell Cycle. 2017;16(21):2073-2085. doi: 10.1080/15384101.2017.1361064. Epub 2017 Sep 28.

16.

CAM: A quality control pipeline for MNase-seq data.

Hu S, Chen X, Liao J, Chen Y, Zhao C, Zhang Y.

PLoS One. 2017 Aug 7;12(8):e0182771. doi: 10.1371/journal.pone.0182771. eCollection 2017.

17.

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.

Oka R, Zicola J, Weber B, Anderson SN, Hodgman C, Gent JI, Wesselink JJ, Springer NM, Hoefsloot HCJ, Turck F, Stam M.

Genome Biol. 2017 Jul 21;18(1):137. doi: 10.1186/s13059-017-1273-4.

18.

Genome-wide Mapping of the Nucleosome Landscape by Micrococcal Nuclease and Chemical Mapping.

Voong LN, Xi L, Wang JP, Wang X.

Trends Genet. 2017 Aug;33(8):495-507. doi: 10.1016/j.tig.2017.05.007. Epub 2017 Jul 7. Review.

PMID:
28693826
19.
20.

A comparison of nucleosome organization in Drosophila cell lines.

Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN.

PLoS One. 2017 Jun 1;12(6):e0178590. doi: 10.1371/journal.pone.0178590. eCollection 2017.

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