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Items: 1 to 20 of 116

1.

miPIE: NGS-based Prediction of miRNA Using Integrated Evidence.

Peace RJ, Sheikh Hassani M, Green JR.

Sci Rep. 2019 Feb 7;9(1):1548. doi: 10.1038/s41598-018-38107-z.

2.

Plasma MicroRNA Pair Panels as Novel Biomarkers for Detection of Early Stage Breast Cancer.

Fang R, Zhu Y, Hu L, Khadka VS, Ai J, Zou H, Ju D, Jiang B, Deng Y, Hu X.

Front Physiol. 2019 Jan 8;9:1879. doi: 10.3389/fphys.2018.01879. eCollection 2018.

3.

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies.

Aparicio-Puerta E, Jáspez D, Lebrón R, Koppers-Lalic D, Marchal JA, Hackenberg M.

Nucleic Acids Res. 2019 Jan 8;47(D1):D113-D120. doi: 10.1093/nar/gky981.

4.

Wide-Ranging Analysis of MicroRNA Profiles in Sporadic Amyotrophic Lateral Sclerosis Using Next-Generation Sequencing.

De Felice B, Manfellotto F, Fiorentino G, Annunziata A, Biffali E, Pannone R, Federico A.

Front Genet. 2018 Aug 14;9:310. doi: 10.3389/fgene.2018.00310. eCollection 2018.

5.

miRge 2.0 for comprehensive analysis of microRNA sequencing data.

Lu Y, Baras AS, Halushka MK.

BMC Bioinformatics. 2018 Jul 23;19(1):275. doi: 10.1186/s12859-018-2287-y.

6.

Plasma small ncRNA pair panels as novel biomarkers for early-stage lung adenocarcinoma screening.

Dou Y, Zhu Y, Ai J, Chen H, Liu H, Borgia JA, Li X, Yang F, Jiang B, Wang J, Deng Y.

BMC Genomics. 2018 Jul 20;19(1):545. doi: 10.1186/s12864-018-4862-z.

7.

Exploring miRNA-mRNA regulatory network in cardiac pathology in Na+/H+ exchanger isoform 1 transgenic mice.

Xue J, Zhou D, Poulsen O, Hartley I, Imamura T, Xie EX, Haddad GG.

Physiol Genomics. 2018 Oct 1;50(10):846-861. doi: 10.1152/physiolgenomics.00048.2018. Epub 2018 Jul 20.

PMID:
30029588
8.

miR-MaGiC improves quantification accuracy for small RNA-seq.

Russell PH, Vestal B, Shi W, Rudra PD, Dowell R, Radcliffe R, Saba L, Kechris K.

BMC Res Notes. 2018 May 15;11(1):296. doi: 10.1186/s13104-018-3418-2.

9.

Genome-wide discovery of tissue-specific miRNAs in clusterbean (Cyamopsis tetragonoloba) indicates their association with galactomannan biosynthesis.

Tyagi A, Nigam D, S V AM, Solanke AU, Singh NK, Sharma TR, Gaikwad K.

Plant Biotechnol J. 2018 Jun;16(6):1241-1257. doi: 10.1111/pbi.12866. Epub 2018 Mar 11.

10.

Molecular and cellular reorganization of neural circuits in the human lineage.

Sousa AMM, Zhu Y, Raghanti MA, Kitchen RR, Onorati M, Tebbenkamp ATN, Stutz B, Meyer KA, Li M, Kawasawa YI, Liu F, Perez RG, Mele M, Carvalho T, Skarica M, Gulden FO, Pletikos M, Shibata A, Stephenson AR, Edler MK, Ely JJ, Elsworth JD, Horvath TL, Hof PR, Hyde TM, Kleinman JE, Weinberger DR, Reimers M, Lifton RP, Mane SM, Noonan JP, State MW, Lein ES, Knowles JA, Marques-Bonet T, Sherwood CC, Gerstein MB, Sestan N.

Science. 2017 Nov 24;358(6366):1027-1032. doi: 10.1126/science.aan3456.

11.

sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline.

Wu X, Kim TK, Baxter D, Scherler K, Gordon A, Fong O, Etheridge A, Galas DJ, Wang K.

Nucleic Acids Res. 2017 Dec 1;45(21):12140-12151. doi: 10.1093/nar/gkx999.

12.

Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.

Vitsios DM, Kentepozidou E, Quintais L, Benito-Gutiérrez E, van Dongen S, Davis MP, Enright AJ.

Nucleic Acids Res. 2017 Dec 1;45(21):e177. doi: 10.1093/nar/gkx836.

13.

TDP-43 regulates cancer-associated microRNAs.

Chen X, Fan Z, McGee W, Chen M, Kong R, Wen P, Xiao T, Chen X, Liu J, Zhu L, Chen R, Wu JY.

Protein Cell. 2018 Oct;9(10):848-866. doi: 10.1007/s13238-017-0480-9. Epub 2017 Sep 26.

14.

Distribution and Evolutionary History of the Mobile Genetic Element s2m in Coronaviruses.

Tengs T, Jonassen CM.

Diseases. 2016 Jul 28;4(3). pii: E27. doi: 10.3390/diseases4030027. Review.

15.

Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases.

Baldassarre A, Felli C, Prantera G, Masotti A.

Genes (Basel). 2017 Sep 19;8(9). pii: E234. doi: 10.3390/genes8090234. Review.

16.

Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs.

Fehlmann T, Backes C, Kahraman M, Haas J, Ludwig N, Posch AE, Würstle ML, Hübenthal M, Franke A, Meder B, Meese E, Keller A.

Nucleic Acids Res. 2017 Sep 6;45(15):8731-8744. doi: 10.1093/nar/gkx595.

17.

Toward the human cellular microRNAome.

McCall MN, Kim MS, Adil M, Patil AH, Lu Y, Mitchell CJ, Leal-Rojas P, Xu J, Kumar M, Dawson VL, Dawson TM, Baras AS, Rosenberg AZ, Arking DE, Burns KH, Pandey A, Halushka MK.

Genome Res. 2017 Oct;27(10):1769-1781. doi: 10.1101/gr.222067.117. Epub 2017 Sep 6.

18.

On the performance of pre-microRNA detection algorithms.

Saçar Demirci MD, Baumbach J, Allmer J.

Nat Commun. 2017 Aug 24;8(1):330. doi: 10.1038/s41467-017-00403-z.

19.

The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. 'Chardonnay'.

Snyman MC, Solofoharivelo MC, Souza-Richards R, Stephan D, Murray S, Burger JT.

PLoS One. 2017 Aug 16;12(8):e0182629. doi: 10.1371/journal.pone.0182629. eCollection 2017.

20.

Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice.

Ahn H, Jung I, Shin SJ, Park J, Rhee S, Kim JK, Jung W, Kwon HB, Kim S.

Front Plant Sci. 2017 Jun 15;8:1044. doi: 10.3389/fpls.2017.01044. eCollection 2017.

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