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Items: 1 to 20 of 21

1.

Elevated Plasma microRNA-105-5p Level in Patients With Idiopathic Parkinson's Disease: A Potential Disease Biomarker.

Yang Z, Li T, Cui Y, Li S, Cheng C, Shen B, Le W.

Front Neurosci. 2019 Mar 18;13:218. doi: 10.3389/fnins.2019.00218. eCollection 2019.

2.

MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery.

Lin Y, Wu W, Sun Z, Shen L, Shen B.

RNA Biol. 2018;15(8):1093-1105. doi: 10.1080/15476286.2018.1502590. Epub 2018 Sep 17.

PMID:
30081733
3.

Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model.

Lin Y, Chen F, Shen L, Tang X, Du C, Sun Z, Ding H, Chen J, Shen B.

J Transl Med. 2018 May 21;16(1):134. doi: 10.1186/s12967-018-1506-7.

4.

mirDIP 4.1-integrative database of human microRNA target predictions.

Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I.

Nucleic Acids Res. 2018 Jan 4;46(D1):D360-D370. doi: 10.1093/nar/gkx1144.

5.

Screening candidate microRNA-mRNA regulatory pairs for predicting the response to chemoradiotherapy in rectal cancer by a bioinformatics approach.

Peng Q, Zhu J, Shen P, Yao W, Lei Y, Zou L, Xu Y, Shen Y, Zhu Y.

Sci Rep. 2017 Sep 12;7(1):11312. doi: 10.1038/s41598-017-11840-7.

6.

Knowledge-Guided Bioinformatics Model for Identifying Autism Spectrum Disorder Diagnostic MicroRNA Biomarkers.

Shen L, Lin Y, Sun Z, Yuan X, Chen L, Shen B.

Sci Rep. 2016 Dec 21;6:39663. doi: 10.1038/srep39663.

7.

Biomarker MicroRNAs for Diagnosis, Prognosis and Treatment of Hepatocellular Carcinoma: A Functional Survey and Comparison.

Shen S, Lin Y, Yuan X, Shen L, Chen J, Chen L, Qin L, Shen B.

Sci Rep. 2016 Dec 5;6:38311. doi: 10.1038/srep38311. Review.

8.

Identification of biomarker microRNAs for predicting the response of colorectal cancer to neoadjuvant chemoradiotherapy based on microRNA regulatory network.

Zhu Y, Peng Q, Lin Y, Zou L, Shen P, Chen F, Min M, Shen L, Chen J, Shen B.

Oncotarget. 2017 Jan 10;8(2):2233-2248. doi: 10.18632/oncotarget.13659.

9.

Drosophila Mitf regulates the V-ATPase and the lysosomal-autophagic pathway.

Bouché V, Espinosa AP, Leone L, Sardiello M, Ballabio A, Botas J.

Autophagy. 2016;12(3):484-98. doi: 10.1080/15548627.2015.1134081.

10.

Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential.

Cava C, Bertoli G, Castiglioni I.

BMC Syst Biol. 2015 Sep 21;9:62. doi: 10.1186/s12918-015-0211-x. Review.

11.

MiRBooking simulates the stoichiometric mode of action of microRNAs.

Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F.

Nucleic Acids Res. 2015 Aug 18;43(14):6730-8. doi: 10.1093/nar/gkv619. Epub 2015 Jun 18.

12.

The Dlx5 and Foxg1 transcription factors, linked via miRNA-9 and -200, are required for the development of the olfactory and GnRH system.

Garaffo G, Conte D, Provero P, Tomaiuolo D, Luo Z, Pinciroli P, Peano C, D'Atri I, Gitton Y, Etzion T, Gothilf Y, Gays D, Santoro MM, Merlo GR.

Mol Cell Neurosci. 2015 Sep;68:103-19. doi: 10.1016/j.mcn.2015.04.007. Epub 2015 Apr 30.

13.

Pumilio1 haploinsufficiency leads to SCA1-like neurodegeneration by increasing wild-type Ataxin1 levels.

Gennarino VA, Singh RK, White JJ, De Maio A, Han K, Kim JY, Jafar-Nejad P, di Ronza A, Kang H, Sayegh LS, Cooper TA, Orr HT, Sillitoe RV, Zoghbi HY.

Cell. 2015 Mar 12;160(6):1087-98. doi: 10.1016/j.cell.2015.02.012.

14.

CLUH regulates mitochondrial biogenesis by binding mRNAs of nuclear-encoded mitochondrial proteins.

Gao J, Schatton D, Martinelli P, Hansen H, Pla-Martin D, Barth E, Becker C, Altmueller J, Frommolt P, Sardiello M, Rugarli EI.

J Cell Biol. 2014 Oct 27;207(2):213-23. doi: 10.1083/jcb.201403129.

15.

Integrative identification of deregulated miRNA/TF-mediated gene regulatory loops and networks in prostate cancer.

Afshar AS, Xu J, Goutsias J.

PLoS One. 2014 Jun 26;9(6):e100806. doi: 10.1371/journal.pone.0100806. eCollection 2014.

16.

MicroRNA-103-1 selectively downregulates brain NCX1 and its inhibition by anti-miRNA ameliorates stroke damage and neurological deficits.

Vinciguerra A, Formisano L, Cerullo P, Guida N, Cuomo O, Esposito A, Di Renzo G, Annunziato L, Pignataro G.

Mol Ther. 2014 Oct;22(10):1829-38. doi: 10.1038/mt.2014.113. Epub 2014 Jun 23.

17.

mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis.

Giles CB, Girija-Devi R, Dozmorov MG, Wren JD.

BMC Bioinformatics. 2013;14 Suppl 14:S17. doi: 10.1186/1471-2105-14-S14-S17. Epub 2013 Oct 9.

18.

MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting.

Cho S, Jang I, Jun Y, Yoon S, Ko M, Kwon Y, Choi I, Chang H, Ryu D, Lee B, Kim VN, Kim W, Lee S.

Nucleic Acids Res. 2013 Jan;41(Database issue):D252-7. doi: 10.1093/nar/gks1168. Epub 2012 Nov 27.

19.

MMpred: functional miRNA--mRNA interaction analyses by miRNA expression prediction.

Stempor PA, Cauchi M, Wilson P.

BMC Genomics. 2012 Nov 14;13:620. doi: 10.1186/1471-2164-13-620.

20.

Identification of microRNA-regulated gene networks by expression analysis of target genes.

Gennarino VA, D'Angelo G, Dharmalingam G, Fernandez S, Russolillo G, Sanges R, Mutarelli M, Belcastro V, Ballabio A, Verde P, Sardiello M, Banfi S.

Genome Res. 2012 Jun;22(6):1163-72. doi: 10.1101/gr.130435.111. Epub 2012 Feb 24.

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