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Items: 1 to 20 of 31

1.

Regulation of angiotensin II actions by enhancers and super-enhancers in vascular smooth muscle cells.

Das S, Senapati P, Chen Z, Reddy MA, Ganguly R, Lanting L, Mandi V, Bansal A, Leung A, Zhang S, Jia Y, Wu X, Schones DE, Natarajan R.

Nat Commun. 2017 Nov 13;8(1):1467. doi: 10.1038/s41467-017-01629-7.

2.

PU.1 supports TRAIL-induced cell death by inhibiting NF-κB-mediated cell survival and inducing DR5 expression.

Haimovici A, Humbert M, Federzoni EA, Shan-Krauer D, Brunner T, Frese S, Kaufmann T, Torbett BE, Tschan MP.

Cell Death Differ. 2017 May;24(5):866-877. doi: 10.1038/cdd.2017.40. Epub 2017 Mar 31.

3.

Iterative Modeling Reveals Evidence of Sequential Transcriptional Control Mechanisms.

Cheng CS, Behar MS, Suryawanshi GW, Feldman KE, Spreafico R, Hoffmann A.

Cell Syst. 2017 Mar 22;4(3):330-343.e5. doi: 10.1016/j.cels.2017.01.012. Epub 2017 Feb 22.

4.

Binding of nuclear factor κB to noncanonical consensus sites reveals its multimodal role during the early inflammatory response.

Kolovos P, Georgomanolis T, Koeferle A, Larkin JD, Brant L, Nikolicć M, Gusmao EG, Zirkel A, Knoch TA, van Ijcken WF, Cook PR, Costa IG, Grosveld FG, Papantonis A.

Genome Res. 2016 Nov;26(11):1478-1489. Epub 2016 Sep 15.

5.

Epigenetic Regulation of Myeloid Cells.

Ivashkiv LB, Park SH.

Microbiol Spectr. 2016 Jun;4(3). doi: 10.1128/microbiolspec.MCHD-0010-2015. Review.

6.

PEDLA: predicting enhancers with a deep learning-based algorithmic framework.

Liu F, Li H, Ren C, Bo X, Shu W.

Sci Rep. 2016 Jun 22;6:28517. doi: 10.1038/srep28517.

7.

There goes the neighborhood: Assembly of transcriptional complexes during the regulation of metabolism and inflammation by the glucocorticoid receptor.

Greulich F, Hemmer MC, Rollins DA, Rogatsky I, Uhlenhaut NH.

Steroids. 2016 Oct;114:7-15. doi: 10.1016/j.steroids.2016.05.003. Epub 2016 May 15. Review.

8.

Epigenetic Control of Macrophage Polarisation and Soluble Mediator Gene Expression during Inflammation.

Kapellos TS, Iqbal AJ.

Mediators Inflamm. 2016;2016:6591703. doi: 10.1155/2016/6591703. Epub 2016 Apr 10. Review.

9.

Epigenetic Regulation of Monocyte and Macrophage Function.

Hoeksema MA, de Winther MP.

Antioxid Redox Signal. 2016 Nov 10;25(14):758-774. Epub 2016 Apr 25. Review.

10.

Epigenetic modifications and diabetic nephropathy.

Reddy MA, Park JT, Natarajan R.

Kidney Res Clin Pract. 2012 Sep;31(3):139-50. doi: 10.1016/j.krcp.2012.07.004. Epub 2012 Jul 21. Review.

11.

Genome-wide predictors of NF-κB recruitment and transcriptional activity.

Cieślik M, Bekiranov S.

BioData Min. 2015 Nov 26;8:37. doi: 10.1186/s13040-015-0071-3. eCollection 2015.

12.

Acute TNF-induced repression of cell identity genes is mediated by NFκB-directed redistribution of cofactors from super-enhancers.

Schmidt SF, Larsen BD, Loft A, Nielsen R, Madsen JG, Mandrup S.

Genome Res. 2015 Sep;25(9):1281-94. doi: 10.1101/gr.188300.114. Epub 2015 Jun 25.

13.

Epigenetic priming of enhancers predicts developmental competence of hESC-derived endodermal lineage intermediates.

Wang A, Yue F, Li Y, Xie R, Harper T, Patel NA, Muth K, Palmer J, Qiu Y, Wang J, Lam DK, Raum JC, Stoffers DA, Ren B, Sander M.

Cell Stem Cell. 2015 Apr 2;16(4):386-99. doi: 10.1016/j.stem.2015.02.013.

14.

CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells.

Li Y, Rivera CM, Ishii H, Jin F, Selvaraj S, Lee AY, Dixon JR, Ren B.

PLoS One. 2014 Dec 8;9(12):e114485. doi: 10.1371/journal.pone.0114485. eCollection 2014.

15.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.

16.

Epigenomics of macrophages.

Gosselin D, Glass CK.

Immunol Rev. 2014 Nov;262(1):96-112. doi: 10.1111/imr.12213. Review.

17.

The 3D genome in transcriptional regulation and pluripotency.

Gorkin DU, Leung D, Ren B.

Cell Stem Cell. 2014 Jun 5;14(6):762-75. doi: 10.1016/j.stem.2014.05.017. Review.

18.

Polymorphisms in the tumor necrosis factor receptor genes affect the expression levels of membrane-bound type I and type II receptors.

Sennikov SV, Vasilyev FF, Lopatnikova JA, Shkaruba NS, Silkov AN.

Mediators Inflamm. 2014;2014:745909. doi: 10.1155/2014/745909. Epub 2014 Mar 24.

19.

A high-resolution map of the three-dimensional chromatin interactome in human cells.

Jin F, Li Y, Dixon JR, Selvaraj S, Ye Z, Lee AY, Yen CA, Schmitt AD, Espinoza CA, Ren B.

Nature. 2013 Nov 14;503(7475):290-4. doi: 10.1038/nature12644. Epub 2013 Oct 20.

20.

Analysis of the RelA:CBP/p300 interaction reveals its involvement in NF-κB-driven transcription.

Mukherjee SP, Behar M, Birnbaum HA, Hoffmann A, Wright PE, Ghosh G.

PLoS Biol. 2013 Sep;11(9):e1001647. doi: 10.1371/journal.pbio.1001647. Epub 2013 Sep 3.

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