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Items: 1 to 20 of 32

1.

Extremely Rare Polymorphisms in Saccharomyces cerevisiae Allow Inference of the Mutational Spectrum.

Zhu YO, Sherlock G, Petrov DA.

PLoS Genet. 2017 Jan 3;13(1):e1006455. doi: 10.1371/journal.pgen.1006455.

2.

Evidence of selection for an accessible nucleosomal array in human.

Drillon G, Audit B, Argoul F, Arneodo A.

BMC Genomics. 2016 Jul 29;17:526. doi: 10.1186/s12864-016-2880-2.

3.

The topography of mutational processes in breast cancer genomes.

Morganella S, Alexandrov LB, Glodzik D, Zou X, Davies H, Staaf J, Sieuwerts AM, Brinkman AB, Martin S, Ramakrishna M, Butler A, Kim HY, Borg Å, Sotiriou C, Futreal PA, Campbell PJ, Span PN, Van Laere S, Lakhani SR, Eyfjord JE, Thompson AM, Stunnenberg HG, van de Vijver MJ, Martens JW, Børresen-Dale AL, Richardson AL, Kong G, Thomas G, Sale J, Rada C, Stratton MR, Birney E, Nik-Zainal S.

Nat Commun. 2016 May 2;7:11383. doi: 10.1038/ncomms11383.

4.

Effects of DNA Methylation and Chromatin State on Rates of Molecular Evolution in Insects.

Glastad KM, Goodisman MA, Yi SV, Hunt BG.

G3 (Bethesda). 2015 Dec 4;6(2):357-63. doi: 10.1534/g3.115.023499.

5.

Genome-wide analysis of the specificity and mechanisms of replication infidelity driven by imbalanced dNTP pools.

Watt DL, Buckland RJ, Lujan SA, Kunkel TA, Chabes A.

Nucleic Acids Res. 2016 Feb 29;44(4):1669-80. doi: 10.1093/nar/gkv1298.

6.

Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species.

Nakatani Y, Mello CC, Hashimoto S, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S.

BMC Genomics. 2015 Nov 19;16:978. doi: 10.1186/s12864-015-2198-5.

7.

Facilitation of base excision repair by chromatin remodeling.

Hinz JM, Czaja W.

DNA Repair (Amst). 2015 Dec;36:91-7. doi: 10.1016/j.dnarep.2015.09.011. Review.

8.

Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact.

Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH.

PLoS One. 2015 Aug 26;10(8):e0136574. doi: 10.1371/journal.pone.0136574.

9.

Nucleosome Organization in Human Embryonic Stem Cells.

Yazdi PG, Pedersen BA, Taylor JF, Khattab OS, Chen YH, Chen Y, Jacobsen SE, Wang PH.

PLoS One. 2015 Aug 25;10(8):e0136314. doi: 10.1371/journal.pone.0136314.

10.

The effects of chromatin organization on variation in mutation rates in the genome.

Makova KD, Hardison RC.

Nat Rev Genet. 2015 Apr;16(4):213-23. doi: 10.1038/nrg3890. Review.

11.

The pattern of DNA cleavage intensity around indels.

Chen W, Zhang L.

Sci Rep. 2015 Feb 9;5:8333. doi: 10.1038/srep08333.

12.

Evidence for evolutionary and nonevolutionary forces shaping the distribution of human genetic variants near transcription start sites.

Scala G, Affinito O, Miele G, Monticelli A, Cocozza S.

PLoS One. 2014 Dec 4;9(12):e114432. doi: 10.1371/journal.pone.0114432.

13.

Distinct roles for histone chaperones in the deposition of Htz1 in chromatin.

Liu H, Zhu M, Mu Y, Liu L, Li G, Wan Y.

Biosci Rep. 2014 Sep 19;34(5). pii: e00139. doi: 10.1042/BSR20140092.

14.

Chromatin structure is distinct between coding and non-coding single nucleotide polymorphisms.

Liu H, Zhai J, Luo K, Liu L.

BMC Mol Biol. 2014 Oct 5;15:22. doi: 10.1186/1471-2199-15-22.

15.

Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Lujan SA, Clausen AR, Clark AB, MacAlpine HK, MacAlpine DM, Malc EP, Mieczkowski PA, Burkholder AB, Fargo DC, Gordenin DA, Kunkel TA.

Genome Res. 2014 Nov;24(11):1751-64. doi: 10.1101/gr.178335.114.

16.

Apoptotic lymphocytes of H. sapiens lose nucleosomes in GC-rich promoters.

Hosid S, Ioshikhes I.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003760. doi: 10.1371/journal.pcbi.1003760.

17.

Genome-wide prediction of cancer driver genes based on SNP and cancer SNV data.

He Q, He Q, Liu X, Wei Y, Shen S, Hu X, Li Q, Peng X, Wang L, Yu L.

Am J Cancer Res. 2014 Jul 16;4(4):394-410.

18.

Nucleosomes shape DNA polymorphism and divergence.

Langley SA, Karpen GH, Langley CH.

PLoS Genet. 2014 Jul 3;10(7):e1004457. doi: 10.1371/journal.pgen.1004457.

19.

Fuzziness and noise in nucleosomal architecture.

Flores O, Deniz Ö, Soler-López M, Orozco M.

Nucleic Acids Res. 2014 Apr;42(8):4934-46. doi: 10.1093/nar/gku165.

20.

Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution.

Warnecke T, Becker EA, Facciotti MT, Nislow C, Lehner B.

PLoS Comput Biol. 2013;9(11):e1003373. doi: 10.1371/journal.pcbi.1003373.

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