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Items: 20

1.

Assisted clustering of gene expression data using ANCut.

Teran Hidalgo SJ, Wu M, Ma S.

BMC Genomics. 2017 Aug 16;18(1):623. doi: 10.1186/s12864-017-3990-1.

2.

E2fl1 is a meiosis-specific transcription factor in the protist Tetrahymena thermophila.

Zhang J, Tian M, Yan GX, Shodhan A, Miao W.

Cell Cycle. 2017 Jan 2;16(1):123-135. doi: 10.1080/15384101.2016.1259779. Epub 2016 Nov 28.

PMID:
27892792
3.

Transcriptome analysis revealed the drought-responsive genes in Tibetan hulless barley.

Zeng X, Bai L, Wei Z, Yuan H, Wang Y, Xu Q, Tang Y, Nyima T.

BMC Genomics. 2016 May 20;17:386. doi: 10.1186/s12864-016-2685-3.

4.

Cyc17, a meiosis-specific cyclin, is essential for anaphase initiation and chromosome segregation in Tetrahymena thermophila.

Yan GX, Dang H, Tian M, Zhang J, Shodhan A, Ning YZ, Xiong J, Miao W.

Cell Cycle. 2016 Jul 17;15(14):1855-64. doi: 10.1080/15384101.2016.1188238. Epub 2016 May 18.

5.

Systems Biology Approach to Model the Life Cycle of Trypanosoma cruzi.

Carrea A, Diambra L.

PLoS One. 2016 Jan 11;11(1):e0146947. doi: 10.1371/journal.pone.0146947. eCollection 2016.

6.

Quantitative assessment of gene expression network module-validation methods.

Li B, Zhang Y, Yu Y, Wang P, Wang Y, Wang Z, Wang Y.

Sci Rep. 2015 Oct 16;5:15258. doi: 10.1038/srep15258.

7.

Genome-wide analysis and expression profiling under heat and drought treatments of HSP70 gene family in soybean (Glycine max L.).

Zhang L, Zhao HK, Dong QL, Zhang YY, Wang YM, Li HY, Xing GJ, Li QY, Dong YS.

Front Plant Sci. 2015 Sep 25;6:773. doi: 10.3389/fpls.2015.00773. eCollection 2015.

8.

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data.

Yang P, Zheng X, Jayaswal V, Hu G, Yang JY, Jothi R.

PLoS Comput Biol. 2015 Aug 7;11(8):e1004403. doi: 10.1371/journal.pcbi.1004403. eCollection 2015 Aug.

9.

High-performance metabolic profiling with dual chromatography-Fourier-transform mass spectrometry (DC-FTMS) for study of the exposome.

Soltow QA, Strobel FH, Mansfield KG, Wachtman L, Park Y, Jones DP.

Metabolomics. 2013 Mar;9(1 Suppl):S132-S143.

10.

Gene expression variability as a unifying element of the pluripotency network.

Mason EA, Mar JC, Laslett AL, Pera MF, Quackenbush J, Wolvetang E, Wells CA.

Stem Cell Reports. 2014 Aug 12;3(2):365-77. doi: 10.1016/j.stemcr.2014.06.008. Epub 2014 Jul 25.

11.

Extrauterine growth restriction on pulmonary vascular endothelial dysfunction in adult male rats: the role of epigenetic mechanisms.

Zhang L, Tang L, Wei J, Lao L, Gu W, Hu Q, Lv Y, Fu L, Du L.

J Hypertens. 2014 Nov;32(11):2188-98; discussion 2198. doi: 10.1097/HJH.0000000000000309.

12.

Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera).

Liu J, Chen N, Chen F, Cai B, Dal Santo S, Tornielli GB, Pezzotti M, Cheng ZM.

BMC Genomics. 2014 Apr 13;15:281. doi: 10.1186/1471-2164-15-281.

13.

The genome sequence of the fungal pathogen Fusarium virguliforme that causes sudden death syndrome in soybean.

Srivastava SK, Huang X, Brar HK, Fakhoury AM, Bluhm BH, Bhattacharyya MK.

PLoS One. 2014 Jan 14;9(1):e81832. doi: 10.1371/journal.pone.0081832. eCollection 2014.

14.

Transcriptome analysis of Salicornia europaea under saline conditions revealed the adaptive primary metabolic pathways as early events to facilitate salt adaptation.

Fan P, Nie L, Jiang P, Feng J, Lv S, Chen X, Bao H, Guo J, Tai F, Wang J, Jia W, Li Y.

PLoS One. 2013 Nov 12;8(11):e80595. doi: 10.1371/journal.pone.0080595. eCollection 2013.

15.

Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation.

Gao S, Xiong J, Zhang C, Berquist BR, Yang R, Zhao M, Molascon AJ, Kwiatkowski SY, Yuan D, Qin Z, Wen J, Kapler GM, Andrews PC, Miao W, Liu Y.

Genes Dev. 2013 Aug 1;27(15):1662-79. doi: 10.1101/gad.218966.113. Epub 2013 Jul 24.

16.

Surprisal analysis of transcripts expression levels in the presence of noise: a reliable determination of the onset of a tumor phenotype.

Gross A, Levine RD.

PLoS One. 2013 Apr 23;8(4):e61554. doi: 10.1371/journal.pone.0061554. Print 2013.

17.

S-bacillithiolation protects conserved and essential proteins against hypochlorite stress in firmicutes bacteria.

Chi BK, Roberts AA, Huyen TT, Bäsell K, Becher D, Albrecht D, Hamilton CJ, Antelmann H.

Antioxid Redox Signal. 2013 Apr 10;18(11):1273-95. doi: 10.1089/ars.2012.4686. Epub 2012 Oct 18.

18.

Deconvolving heterogeneity in the CD8+ T-cell response to HIV.

Haining WN, Barnitz RA.

Curr Opin HIV AIDS. 2012 Jan;7(1):38-43. doi: 10.1097/COH.0b013e32834dde1c. Review.

19.
20.

attract: A method for identifying core pathways that define cellular phenotypes.

Mar JC, Matigian NA, Quackenbush J, Wells CA.

PLoS One. 2011;6(10):e25445. doi: 10.1371/journal.pone.0025445. Epub 2011 Oct 14.

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