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Items: 1 to 20 of 29

1.

A locus encoding variable defence systems against invading DNA identified in Streptococcus suis.

Okura M, Nozawa T, Watanabe T, Murase K, Nakagawa I, Takamatsu D, Osaki M, Sekizaki T, Gottschalk M, Hamada S, Maruyama F.

Genome Biol Evol. 2017 Apr 4. doi: 10.1093/gbe/evx062. [Epub ahead of print]

2.

Dynamic Expansion and Contraction of cagA Copy Number in Helicobacter pylori Impact Development of Gastric Disease.

Jang S, Su H, Blum FC, Bae S, Choi YH, Kim A, Hong YA, Kim J, Kim JH, Gunawardhana N, Jeon YE, Yoo YJ, Merrell DS, Ge L, Cha JH.

MBio. 2017 Feb 21;8(1). pii: e01779-16. doi: 10.1128/mBio.01779-16.

3.

A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands.

Uchiyama I, Albritton J, Fukuyo M, Kojima KK, Yahara K, Kobayashi I.

PLoS One. 2016 Aug 9;11(8):e0159419. doi: 10.1371/journal.pone.0159419. eCollection 2016.

4.

Evolution of Helicobacter: Acquisition by Gastric Species of Two Histidine-Rich Proteins Essential for Colonization.

Vinella D, Fischer F, Vorontsov E, Gallaud J, Malosse C, Michel V, Cavazza C, Robbe-Saule M, Richaud P, Chamot-Rooke J, Brochier-Armanet C, De Reuse H.

PLoS Pathog. 2015 Dec 7;11(12):e1005312. doi: 10.1371/journal.ppat.1005312. eCollection 2015 Dec.

5.

Restriction-Modification Systems as Mobile Genetic Elements in the Evolution of an Intracellular Symbiont.

Zheng H, Dietrich C, Hongoh Y, Brune A.

Mol Biol Evol. 2016 Mar;33(3):721-5. doi: 10.1093/molbev/msv264. Epub 2015 Nov 13.

6.

Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance.

Kojima KK, Kobayashi I.

BMC Genomics. 2015 Oct 19;16:817. doi: 10.1186/s12864-015-2021-3.

7.

Proteomic characterization of Helicobacter pylori CagA antigen recognized by child serum antibodies and its epitope mapping by peptide array.

Akada J, Okuda M, Hiramoto N, Kitagawa T, Zhang X, Kamei S, Ito A, Nakamura M, Uchida T, Hiwatani T, Fukuda Y, Nakazawa T, Kuramitsu Y, Nakamura K.

PLoS One. 2014 Aug 20;9(8):e104611. doi: 10.1371/journal.pone.0104611. eCollection 2014.

8.

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts.

Oliveira PH, Touchon M, Rocha EP.

Nucleic Acids Res. 2014;42(16):10618-31. doi: 10.1093/nar/gku734. Epub 2014 Aug 12.

9.

Reduced genome size of Helicobacter pylori originating from East Asia.

Dong QJ, Wang LL, Tian ZB, Yu XJ, Jia SJ, Xuan SY.

World J Gastroenterol. 2014 May 21;20(19):5666-71. doi: 10.3748/wjg.v20.i19.5666. Review.

10.

A comprehensive analysis of Helicobacter pylori plasticity zones reveals that they are integrating conjugative elements with intermediate integration specificity.

Fischer W, Breithaupt U, Kern B, Smith SI, Spicher C, Haas R.

BMC Genomics. 2014 Apr 27;15:310. doi: 10.1186/1471-2164-15-310.

11.

Methylome diversification through changes in DNA methyltransferase sequence specificity.

Furuta Y, Namba-Fukuyo H, Shibata TF, Nishiyama T, Shigenobu S, Suzuki Y, Sugano S, Hasebe M, Kobayashi I.

PLoS Genet. 2014 Apr 10;10(4):e1004272. doi: 10.1371/journal.pgen.1004272. eCollection 2014 Apr.

12.

Cytogenetics of a parthenogenetic Arctic species of Micropsectra (Diptera, Chironomidae).

Porter DL, Martin J.

Comp Cytogenet. 2011 Nov 9;5(4):315-28. doi: 10.3897/CompCytogen.v5i4.1356. eCollection 2011.

13.

To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems.

Mruk I, Kobayashi I.

Nucleic Acids Res. 2014 Jan;42(1):70-86. doi: 10.1093/nar/gkt711. Epub 2013 Aug 13. Review.

14.

Chromosome painting in silico in a bacterial species reveals fine population structure.

Yahara K, Furuta Y, Oshima K, Yoshida M, Azuma T, Hattori M, Uchiyama I, Kobayashi I.

Mol Biol Evol. 2013 Jun;30(6):1454-64. doi: 10.1093/molbev/mst055. Epub 2013 Mar 16.

15.

Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution.

Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, Yang L, Song C, Wang M, Shi J, Liu G, Liu J, Zhou H, Zhou W, Yu Q, An N, Chen Y, Cai Q, Wang B, Liu B, Min J, Huang Y, Wu H, Li Z, Zhang Y, Yin Y, Song W, Jiang J, Jackson SA, Wing RA, Wang J, Chen M.

Nat Commun. 2013;4:1595. doi: 10.1038/ncomms2596.

16.

Diverse functions of restriction-modification systems in addition to cellular defense.

Vasu K, Nagaraja V.

Microbiol Mol Biol Rev. 2013 Mar;77(1):53-72. doi: 10.1128/MMBR.00044-12. Review.

17.

The significance of virulence factors in Helicobacter pylori.

Shiota S, Suzuki R, Yamaoka Y.

J Dig Dis. 2013 Jul;14(7):341-9. doi: 10.1111/1751-2980.12054. Review.

18.

Comparative genomic analysis of East Asian and non-Asian Helicobacter pylori strains identifies rapidly evolving genes.

Duncan SS, Valk PL, McClain MS, Shaffer CL, Metcalf JA, Bordenstein SR, Cover TL.

PLoS One. 2013;8(1):e55120. doi: 10.1371/journal.pone.0055120. Epub 2013 Jan 31.

19.

Genome sequences of three Helicobacter pylori strains isolated from atrophic gastritis and gastric ulcer patients in China.

You Y, Liu L, Zhang M, Han X, He L, Zhu Y, Ni P, Zhang J.

J Bacteriol. 2012 Nov;194(22):6314-5. doi: 10.1128/JB.01399-12.

20.

Structural analysis of hypothetical proteins from Helicobacter pylori: an approach to estimate functions of unknown or hypothetical proteins.

Park SJ, Son WS, Lee BJ.

Int J Mol Sci. 2012;13(6):7109-37. doi: 10.3390/ijms13067109. Epub 2012 Jun 8. Review.

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