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Items: 1 to 20 of 38


RNA synthesis is associated with multiple TBP-chromatin binding events.

Zaidi HA, Auble DT, Bekiranov S.

Sci Rep. 2017 Jan 4;7:39631. doi: 10.1038/srep39631.


Multiple Transcript Properties Related to Translation Affect mRNA Degradation Rates in Saccharomyces cerevisiae.

Neymotin B, Ettore V, Gresham D.

G3 (Bethesda). 2016 Sep 15. pii: g3.116.032276. doi: 10.1534/g3.116.032276. [Epub ahead of print]


Selection on Position of Nonsense Codons in Introns.

Behringer MG, Hall DW.

Genetics. 2016 Nov;204(3):1239-1248. doi: 10.1534/genetics.116.189894.


S1-DRIP-seq identifies high expression and polyA tracts as major contributors to R-loop formation.

Wahba L, Costantino L, Tan FJ, Zimmer A, Koshland D.

Genes Dev. 2016 Jun 1;30(11):1327-38. doi: 10.1101/gad.280834.116.


Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast.

Booth GT, Wang IX, Cheung VG, Lis JT.

Genome Res. 2016 Jun;26(6):799-811. doi: 10.1101/gr.204578.116.


Establishment of a promoter-based chromatin architecture on recently replicated DNA can accommodate variable inter-nucleosome spacing.

Fennessy RT, Owen-Hughes T.

Nucleic Acids Res. 2016 Sep 6;44(15):7189-203. doi: 10.1093/nar/gkw331.


Determinants of RNA metabolism in the Schizosaccharomyces pombe genome.

Eser P, Wachutka L, Maier KC, Demel C, Boroni M, Iyer S, Cramer P, Gagneur J.

Mol Syst Biol. 2016 Feb 16;12(2):857. doi: 10.15252/msb.20156526.


The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons.

García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE.

Nucleic Acids Res. 2016 May 5;44(8):3643-58. doi: 10.1093/nar/gkv1512.


Next-generation analysis of gene expression regulation--comparing the roles of synthesis and degradation.

McManus J, Cheng Z, Vogel C.

Mol Biosyst. 2015 Oct;11(10):2680-9. doi: 10.1039/c5mb00310e. Review.


H3K36 methylation promotes longevity by enhancing transcriptional fidelity.

Sen P, Dang W, Donahue G, Dai J, Dorsey J, Cao X, Liu W, Cao K, Perry R, Lee JY, Wasko BM, Carr DT, He C, Robison B, Wagner J, Gregory BD, Kaeberlein M, Kennedy BK, Boeke JD, Berger SL.

Genes Dev. 2015 Jul 1;29(13):1362-76. doi: 10.1101/gad.263707.115.


Probing the closed-loop model of mRNA translation in living cells.

Archer SK, Shirokikh NE, Hallwirth CV, Beilharz TH, Preiss T.

RNA Biol. 2015;12(3):248-54. doi: 10.1080/15476286.2015.1017242.


Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle.

Jordán-Pla A, Gupta I, de Miguel-Jiménez L, Steinmetz LM, Chávez S, Pelechano V, Pérez-Ortín JE.

Nucleic Acids Res. 2015 Jan;43(2):787-802. doi: 10.1093/nar/gku1349.


Genome-wide mapping of yeast RNA polymerase II termination.

Schaughency P, Merran J, Corden JL.

PLoS Genet. 2014 Oct 9;10(10):e1004632. doi: 10.1371/journal.pgen.1004632.


Stress-induced nuclear RNA degradation pathways regulate yeast bromodomain factor 2 to promote cell survival.

Roy K, Chanfreau G.

PLoS Genet. 2014 Sep 18;10(9):e1004661. doi: 10.1371/journal.pgen.1004661.


Reply to Chen and Zhang: On interpreting genome-wide trends from yeast mutation accumulation data.

Zhu YO, Siegal ML, Hall DW, Petrov DA.

Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):E4063. doi: 10.1073/pnas.1413861111. No abstract available.


Determination of in vivo RNA kinetics using RATE-seq.

Neymotin B, Athanasiadou R, Gresham D.

RNA. 2014 Oct;20(10):1645-52. doi: 10.1261/rna.045104.114.


Precise estimates of mutation rate and spectrum in yeast.

Zhu YO, Siegal ML, Hall DW, Petrov DA.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2310-8. doi: 10.1073/pnas.1323011111.


Dynamic remodeling of histone modifications in response to osmotic stress in Saccharomyces cerevisiae.

Magraner-Pardo L, Pelechano V, Coloma MD, Tordera V.

BMC Genomics. 2014 Mar 30;15:247. doi: 10.1186/1471-2164-15-247.


Cytoplasmic 5'-3' exonuclease Xrn1p is also a genome-wide transcription factor in yeast.

Medina DA, Jordán-Pla A, Millán-Zambrano G, Chávez S, Choder M, Pérez-Ortín JE.

Front Genet. 2014 Feb 6;5:1. doi: 10.3389/fgene.2014.00001.

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