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Items: 1 to 20 of 21

1.

Urea-Dependent Adenylate Kinase Activation following Redistribution of Structural States.

Rogne P, Wolf-Watz M.

Biophys J. 2016 Oct 4;111(7):1385-1395. doi: 10.1016/j.bpj.2016.08.028.

PMID:
27705762
2.

Linkage between Fitness of Yeast Cells and Adenylate Kinase Catalysis.

Tükenmez H, Magnussen HM, Kovermann M, Byström A, Wolf-Watz M.

PLoS One. 2016 Sep 19;11(9):e0163115. doi: 10.1371/journal.pone.0163115.

3.

Characterizing Active Site Conformational Heterogeneity along the Trajectory of an Enzymatic Phosphoryl Transfer Reaction.

Zeymer C, Werbeck ND, Zimmermann S, Reinstein J, Hansen DF.

Angew Chem Int Ed Engl. 2016 Sep 12;55(38):11533-7. doi: 10.1002/anie.201606238.

4.

Study into the kinetic properties and surface attachment of a thermostable adenylate kinase.

Hathaway HJ, Sutton JM, Jenkins AT.

Biochem Biophys Rep. 2015 May;1:1-7.

5.

Mapping the Dynamics Landscape of Conformational Transitions in Enzyme: The Adenylate Kinase Case.

Li D, Liu MS, Ji B.

Biophys J. 2015 Aug 4;109(3):647-60. doi: 10.1016/j.bpj.2015.06.059.

6.

Energetics and structural characterization of the large-scale functional motion of adenylate kinase.

Formoso E, Limongelli V, Parrinello M.

Sci Rep. 2015 Feb 12;5:8425. doi: 10.1038/srep08425.

7.

Capturing transition paths and transition states for conformational rearrangements in the ribosome.

Noel JK, Chahine J, Leite VB, Whitford PC.

Biophys J. 2014 Dec 16;107(12):2881-90. doi: 10.1016/j.bpj.2014.10.022.

8.

In the multi-domain protein adenylate kinase, domain insertion facilitates cooperative folding while accommodating function at domain interfaces.

Giri Rao VV, Gosavi S.

PLoS Comput Biol. 2014 Nov 13;10(11):e1003938. doi: 10.1371/journal.pcbi.1003938.

9.

Correlated inter-domain motions in adenylate kinase.

Esteban-Martín S, Fenwick RB, Ådén J, Cossins B, Bertoncini CW, Guallar V, Wolf-Watz M, Salvatella X.

PLoS Comput Biol. 2014 Jul 31;10(7):e1003721. doi: 10.1371/journal.pcbi.1003721.

10.

RNA mimicry by the fap7 adenylate kinase in ribosome biogenesis.

Loc'h J, Blaud M, Réty S, Lebaron S, Deschamps P, Bareille J, Jombart J, Robert-Paganin J, Delbos L, Chardon F, Zhang E, Charenton C, Tollervey D, Leulliot N.

PLoS Biol. 2014 May 13;12(5):e1001860. doi: 10.1371/journal.pbio.1001860.

11.

Global structural motions from the strain of a single hydrogen bond.

Danielsson J, Awad W, Saraboji K, Kurnik M, Lang L, Leinartaite L, Marklund SL, Logan DT, Oliveberg M.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3829-34. doi: 10.1073/pnas.1217306110.

12.

Conditional disorder in chaperone action.

Bardwell JC, Jakob U.

Trends Biochem Sci. 2012 Dec;37(12):517-25. doi: 10.1016/j.tibs.2012.08.006. Review.

13.

Biomolecular dynamics: order-disorder transitions and energy landscapes.

Whitford PC, Sanbonmatsu KY, Onuchic JN.

Rep Prog Phys. 2012 Jul;75(7):076601. doi: 10.1088/0034-4885/75/7/076601.

14.

Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.

Ramanathan A, Savol AJ, Agarwal PK, Chennubhotla CS.

Proteins. 2012 Nov;80(11):2536-51. doi: 10.1002/prot.24135.

15.
16.

Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis.

Dago AE, Schug A, Procaccini A, Hoch JA, Weigt M, Szurmant H.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):E1733-42. doi: 10.1073/pnas.1201301109.

17.

Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.

Fenwick RB, Esteban-Martín S, Salvatella X.

Eur Biophys J. 2011 Dec;40(12):1339-55. doi: 10.1007/s00249-011-0754-8. Review.

18.

Excited states of ribosome translocation revealed through integrative molecular modeling.

Whitford PC, Ahmed A, Yu Y, Hennelly SP, Tama F, Spahn CM, Onuchic JN, Sanbonmatsu KY.

Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):18943-8. doi: 10.1073/pnas.1108363108.

19.

Interconversion of functional motions between mesophilic and thermophilic adenylate kinases.

Daily MD, Phillips GN Jr, Cui Q.

PLoS Comput Biol. 2011 Jul;7(7):e1002103. doi: 10.1371/journal.pcbi.1002103.

20.

On the role of frustration in the energy landscapes of allosteric proteins.

Ferreiro DU, Hegler JA, Komives EA, Wolynes PG.

Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3499-503. doi: 10.1073/pnas.1018980108.

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