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Transcription factors in microalgae: genome-wide prediction and comparative analysis.

Thiriet-Rupert S, Carrier G, Chénais B, Trottier C, Bougaran G, Cadoret JP, Schoefs B, Saint-Jean B.

BMC Genomics. 2016 Apr 11;17:282. doi: 10.1186/s12864-016-2610-9.


A Novel Type Pathway-Specific Regulator and Dynamic Genome Environments of a Solanapyrone Biosynthesis Gene Cluster in the Fungus Ascochyta rabiei.

Kim W, Park JJ, Gang DR, Peever TL, Chen W.

Eukaryot Cell. 2015 Nov;14(11):1102-13. doi: 10.1128/EC.00084-15. Epub 2015 Sep 4.


The pcz1 gene, which encodes a Zn(II)2Cys6 protein, is involved in the control of growth, conidiation, and conidial germination in the filamentous fungus Penicillium roqueforti.

Gil-Durán C, Rojas-Aedo JF, Medina E, Vaca I, García-Rico RO, Villagrán S, Levicán G, Chávez R.

PLoS One. 2015 Mar 26;10(3):e0120740. doi: 10.1371/journal.pone.0120740. eCollection 2015.


Prevalence of transcription factors in ascomycete and basidiomycete fungi.

Todd RB, Zhou M, Ohm RA, Leeggangers HA, Visser L, de Vries RP.

BMC Genomics. 2014 Mar 20;15:214. doi: 10.1186/1471-2164-15-214.


ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.

Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W529-33. doi: 10.1093/nar/gkq399. Epub 2010 May 16.


In silico analysis for transcription factors with Zn(II)(2)C(6) binuclear cluster DNA-binding domains in Candida albicans.

Maicas S, Moreno I, Nieto A, Gómez M, Sentandreu R, Valentín E.

Comp Funct Genomics. 2005;6(7-8):345-56. doi: 10.1002/cfg.492.


Structural basis for metal binding specificity: the N-terminal cadmium binding domain of the P1-type ATPase CadA.

Banci L, Bertini I, Ciofi-Baffoni S, Su XC, Miras R, Bal N, Mintz E, Catty P, Shokes JE, Scott RA.

J Mol Biol. 2006 Feb 24;356(3):638-50. Epub 2005 Dec 5.


FluG-dependent asexual development in Aspergillus nidulans occurs via derepression.

Seo JA, Guan Y, Yu JH.

Genetics. 2006 Mar;172(3):1535-44. Epub 2005 Dec 30.


Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism.

Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R.

Microbiol Mol Biol Rev. 2004 Mar;68(1):1-108. Review.


Transcriptional induction by aromatic amino acids in Saccharomyces cerevisiae.

Iraqui I, Vissers S, André B, Urrestarazu A.

Mol Cell Biol. 1999 May;19(5):3360-71.


Binding of Gal4p and bicoid to nucleosomal sites in yeast in the absence of replication.

Balasubramanian B, Morse RH.

Mol Cell Biol. 1999 Apr;19(4):2977-85.


In vitro analysis of the zinc-finger motif in human replication protein A.

Dong J, Park JS, Lee SH.

Biochem J. 1999 Jan 15;337 ( Pt 2):311-7.


FacB, the Aspergillus nidulans activator of acetate utilization genes, binds dissimilar DNA sequences.

Todd RB, Andrianopoulos A, Davis MA, Hynes MJ.

EMBO J. 1998 Apr 1;17(7):2042-54.

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