Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 95

1.

Bridging the gap between in vitro and in vivo RNA folding.

Leamy KA, Assmann SM, Mathews DH, Bevilacqua PC.

Q Rev Biophys. 2016 Jan;49:e10.

PMID:
27658939
2.

Metrics for rapid quality control in RNA structure probing experiments.

Choudhary K, Shih NP, Deng F, Ledda M, Li B, Aviran S.

Bioinformatics. 2016 Dec 1;32(23):3575-3583.

PMID:
27497441
3.

RNA Matchmaking: Finding Cellular Pairing Partners.

Graveley BR.

Mol Cell. 2016 Jul 21;63(2):186-9. doi: 10.1016/j.molcel.2016.07.001. Review.

PMID:
27447984
4.

Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution.

Kutchko KM, Laederach A.

Wiley Interdiscip Rev RNA. 2017 Jan;8(1). doi: 10.1002/wrna.1374. Review.

5.

Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis.

Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH, Stadler PF, Dersch P, Narberhaus F.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7237-42. doi: 10.1073/pnas.1523004113.

6.

Emerging roles for long noncoding RNAs in skeletal biology and disease.

Huynh NP, Anderson BA, Guilak F, McAlinden A.

Connect Tissue Res. 2017 Jan;58(1):116-141. doi: 10.1080/03008207.2016.1194406.

7.

Data-directed RNA secondary structure prediction using probabilistic modeling.

Deng F, Ledda M, Vaziri S, Aviran S.

RNA. 2016 Aug;22(8):1109-19. doi: 10.1261/rna.055756.115.

PMID:
27251549
8.

Long noncoding RNAs in cancer: mechanisms of action and technological advancements.

Bartonicek N, Maag JL, Dinger ME.

Mol Cancer. 2016 May 27;15(1):43. doi: 10.1186/s12943-016-0530-6. Review.

9.

Understanding the Functions of Long Non-Coding RNAs through Their Higher-Order Structures.

Li R, Zhu H, Luo Y.

Int J Mol Sci. 2016 May 17;17(5). pii: E702. doi: 10.3390/ijms17050702. Review.

10.

RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data.

Wu Y, Qu R, Huang Y, Shi B, Liu M, Li Y, Lu ZJ.

Nucleic Acids Res. 2016 Jul 8;44(W1):W294-301. doi: 10.1093/nar/gkw362.

11.

RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAs.

Strobel EJ, Watters KE, Loughrey D, Lucks JB.

Curr Opin Biotechnol. 2016 Jun;39:182-91. doi: 10.1016/j.copbio.2016.03.019. Review.

12.

The interplay of long non-coding RNAs and MYC in cancer.

Hamilton MJ, Young MD, Sauer S, Martinez E.

AIMS Biophys. 2015;2(4):794-809.

13.

Decoding the RNA structurome.

Lu Z, Chang HY.

Curr Opin Struct Biol. 2016 Feb;36:142-8. doi: 10.1016/j.sbi.2016.01.007. Review.

PMID:
26923056
14.

Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer.

Fang Y, Fullwood MJ.

Genomics Proteomics Bioinformatics. 2016 Feb;14(1):42-54. doi: 10.1016/j.gpb.2015.09.006. Review.

15.

The Conservation and Function of RNA Secondary Structure in Plants.

Vandivier LE, Anderson SJ, Foley SW, Gregory BD.

Annu Rev Plant Biol. 2016 Apr 29;67:463-88. doi: 10.1146/annurev-arplant-043015-111754.

PMID:
26865341
16.

Transcriptome-wide interrogation of RNA secondary structure in living cells with icSHAPE.

Flynn RA, Zhang QC, Spitale RC, Lee B, Mumbach MR, Chang HY.

Nat Protoc. 2016 Feb;11(2):273-90. doi: 10.1038/nprot.2016.011.

17.

A DEAD-box RNA helicase promotes thermodynamic equilibration of kinetically trapped RNA structures in vivo.

Ruminski DJ, Watson PY, Mahen EM, Fedor MJ.

RNA. 2016 Mar;22(3):416-27. doi: 10.1261/rna.055178.115.

PMID:
26759451
18.

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure.

Theis C, Zirbel CL, Zu Siederdissen CH, Anthon C, Hofacker IL, Nielsen H, Gorodkin J.

PLoS One. 2015 Oct 28;10(10):e0139900. doi: 10.1371/journal.pone.0139900.

19.

Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis.

Smola MJ, Rice GM, Busan S, Siegfried NA, Weeks KM.

Nat Protoc. 2015 Nov;10(11):1643-69. doi: 10.1038/nprot.2015.103.

20.

Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structure.

Zou C, Ouyang Z.

Nucleic Acids Res. 2015 Oct 30;43(19):9187-97. doi: 10.1093/nar/gkv950.

Items per page

Supplemental Content

Support Center