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Items: 1 to 20 of 103


Sequence-based multiscale modeling for high-throughput chromosome conformation capture (Hi-C) data analysis.

Xia K.

PLoS One. 2018 Feb 6;13(2):e0191899. doi: 10.1371/journal.pone.0191899. eCollection 2018.


Chromosome-nuclear envelope attachments affect interphase chromosome territories and entanglement.

Kinney NA, Sharakhov IV, Onufriev AV.

Epigenetics Chromatin. 2018 Jan 22;11(1):3. doi: 10.1186/s13072-018-0173-5.


CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression.

Ren G, Jin W, Cui K, Rodrigez J, Hu G, Zhang Z, Larson DR, Zhao K.

Mol Cell. 2017 Sep 21;67(6):1049-1058.e6. doi: 10.1016/j.molcel.2017.08.026.


Condensin-mediated remodeling of the mitotic chromatin landscape in fission yeast.

Kakui Y, Rabinowitz A, Barry DJ, Uhlmann F.

Nat Genet. 2017 Oct;49(10):1553-1557. doi: 10.1038/ng.3938. Epub 2017 Aug 21.


A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi.

Erlendson AA, Friedman S, Freitag M.

Microbiol Spectr. 2017 Jul;5(4). doi: 10.1128/microbiolspec.FUNK-0054-2017. Review.


An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data.

Carty M, Zamparo L, Sahin M, González A, Pelossof R, Elemento O, Leslie CS.

Nat Commun. 2017 May 17;8:15454. doi: 10.1038/ncomms15454.


Tracking the evolution of 3D gene organization demonstrates its connection to phenotypic divergence.

Diament A, Tuller T.

Nucleic Acids Res. 2017 May 5;45(8):4330-4343. doi: 10.1093/nar/gkx205.


The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite.

Batugedara G, Lu XM, Bunnik EM, Le Roch KG.

Trends Parasitol. 2017 May;33(5):364-377. doi: 10.1016/ Epub 2017 Jan 5. Review.


Heterogeneous Spatial Distribution of Transcriptional Activity in Budding Yeast Nuclei.

Tokuda N, Sasai M.

Biophys J. 2017 Feb 7;112(3):491-504. doi: 10.1016/j.bpj.2016.11.3201. Epub 2016 Dec 28.


Statistical challenges in analyzing methylation and long-range chromosomal interaction data.

Qin Z, Li B, Conneely KN, Wu H, Hu M, Ayyala D, Park Y, Jin VX, Zhang F, Zhang H, Li L, Lin S.

Stat Biosci. 2016 Oct;8(2):284-309. doi: 10.1007/s12561-016-9145-0. Epub 2016 Mar 7.


Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome.

Burrack LS, Hutton HF, Matter KJ, Clancey SA, Liachko I, Plemmons AE, Saha A, Power EA, Turman B, Thevandavakkam MA, Ay F, Dunham MJ, Berman J.

PLoS Genet. 2016 Sep 23;12(9):e1006317. doi: 10.1371/journal.pgen.1006317. eCollection 2016 Sep.


Selection on Position of Nonsense Codons in Introns.

Behringer MG, Hall DW.

Genetics. 2016 Nov;204(3):1239-1248. doi: 10.1534/genetics.116.189894. Epub 2016 Sep 14.


Genome-wide mapping and analysis of chromosome architecture.

Schmitt AD, Hu M, Ren B.

Nat Rev Mol Cell Biol. 2016 Dec;17(12):743-755. doi: 10.1038/nrm.2016.104. Epub 2016 Sep 1. Review.


Transcription factors mediate condensin recruitment and global chromosomal organization in fission yeast.

Kim KD, Tanizawa H, Iwasaki O, Noma K.

Nat Genet. 2016 Oct;48(10):1242-52. doi: 10.1038/ng.3647. Epub 2016 Aug 22.


An IF-FISH Approach for Covisualization of Gene Loci and Nuclear Architecture in Fission Yeast.

Kim KD, Iwasaki O, Noma K.

Methods Enzymol. 2016;574:167-180. doi: 10.1016/bs.mie.2016.04.003. Epub 2016 Jun 1.


Restriction of Retrotransposon Mobilization in Schizosaccharomyces pombe by Transcriptional Silencing and Higher-Order Chromatin Organization.

Murton HE, Grady PJ, Chan TH, Cam HP, Whitehall SK.

Genetics. 2016 Aug;203(4):1669-78. doi: 10.1534/genetics.116.189118. Epub 2016 Jun 24.


The second decade of 3C technologies: detailed insights into nuclear organization.

Denker A, de Laat W.

Genes Dev. 2016 Jun 15;30(12):1357-82. doi: 10.1101/gad.281964.116. Review.


Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations.

Sefer E, Duggal G, Kingsford C.

J Comput Biol. 2016 Jun;23(6):425-38. doi: 10.1089/cmb.2015.0210.


A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions.

Fotuhi Siahpirani A, Ay F, Roy S.

Genome Biol. 2016 May 27;17(1):114. doi: 10.1186/s13059-016-0962-8.


The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity.

Sebé-Pedrós A, Ballaré C, Parra-Acero H, Chiva C, Tena JJ, Sabidó E, Gómez-Skarmeta JL, Di Croce L, Ruiz-Trillo I.

Cell. 2016 May 19;165(5):1224-1237. doi: 10.1016/j.cell.2016.03.034. Epub 2016 Apr 21.

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