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Items: 1 to 20 of 32

1.

Computational prediction of microRNAs in marine bacteria of the genus Thalassospira.

Dang THY, Tyagi S, D'Cunha G, Bhave M, Crawford R, Ivanova EP.

PLoS One. 2019 Mar 12;14(3):e0212996. doi: 10.1371/journal.pone.0212996. eCollection 2019.

2.

Adaboost-SVM-based probability algorithm for the prediction of all mature miRNA sites based on structured-sequence features.

Wang Y, Ru J, Jiang Y, Zhang J.

Sci Rep. 2019 Feb 6;9(1):1521. doi: 10.1038/s41598-018-38048-7.

3.

Computational prediction of miRNAs in Nipah virus genome reveals possible interaction with human genes involved in encephalitis.

Saini S, Thakur CJ, Kumar V, Tandon S, Bhardwaj V, Maggar S, Namgyal S, Kaur G.

Mol Biol Res Commun. 2018 Sep;7(3):107-118. doi: 10.22099/mbrc.2018.29577.1322.

4.

StarSeeker: an automated tool for mature duplex microRNA sequence identification based on secondary structure modeling of precursor molecule.

Natsidis P, Kappas I, Karlowski WM.

J Biol Res (Thessalon). 2018 Jun 15;25:11. doi: 10.1186/s40709-018-0081-7. eCollection 2018 Dec.

5.

Comparing miRNA structure of mirtrons and non-mirtrons.

Titov II, Vorozheykin PS.

BMC Genomics. 2018 Feb 9;19(Suppl 3):114. doi: 10.1186/s12864-018-4473-8.

6.

The Expressed MicroRNA-mRNA Interactions of Toxoplasma gondii.

Acar İE, Saçar Demirci MD, Groß U, Allmer J.

Front Microbiol. 2018 Jan 4;8:2630. doi: 10.3389/fmicb.2017.02630. eCollection 2017.

7.

On the performance of pre-microRNA detection algorithms.

Saçar Demirci MD, Baumbach J, Allmer J.

Nat Commun. 2017 Aug 24;8(1):330. doi: 10.1038/s41467-017-00403-z.

8.

Evolution of microRNA in primates.

McCreight JC, Schneider SE, Wilburn DB, Swanson WJ.

PLoS One. 2017 Jun 22;12(6):e0176596. doi: 10.1371/journal.pone.0176596. eCollection 2017.

9.

ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.

Gupta AK, Kaur K, Rajput A, Dhanda SK, Sehgal M, Khan MS, Monga I, Dar SA, Singh S, Nagpal G, Usmani SS, Thakur A, Kaur G, Sharma S, Bhardwaj A, Qureshi A, Raghava GP, Kumar M.

Sci Rep. 2016 Sep 16;6:32713. doi: 10.1038/srep32713.

10.

Improving classification of mature microRNA by solving class imbalance problem.

Wang Y, Li X, Tao B.

Sci Rep. 2016 May 16;6:25941. doi: 10.1038/srep25941.

11.

The Sequence and Structure Determine the Function of Mature Human miRNAs.

Rolle K, Piwecka M, Belter A, Wawrzyniak D, Jeleniewicz J, Barciszewska MZ, Barciszewski J.

PLoS One. 2016 Mar 31;11(3):e0151246. doi: 10.1371/journal.pone.0151246. eCollection 2016.

12.

Computational identification of putative miRNAs and their target genes in pathogenic amoeba Naegleria fowleri.

Padmashree D, Swamy NR.

Bioinformation. 2015 Dec 31;11(12):550-7. doi: 10.6026/97320630011550. eCollection 2015.

13.

MatPred: Computational Identification of Mature MicroRNAs within Novel Pre-MicroRNAs.

Li J, Wang Y, Wang L, Feng W, Luan K, Dai X, Xu C, Meng X, Zhang Q, Liang H.

Biomed Res Int. 2015;2015:546763. doi: 10.1155/2015/546763. Epub 2015 Nov 23.

14.

Bioinformatic tools for microRNA dissection.

Akhtar MM, Micolucci L, Islam MS, Olivieri F, Procopio AD.

Nucleic Acids Res. 2016 Jan 8;44(1):24-44. doi: 10.1093/nar/gkv1221. Epub 2015 Nov 17. Review.

15.

miRLocator: Machine Learning-Based Prediction of Mature MicroRNAs within Plant Pre-miRNA Sequences.

Cui H, Zhai J, Ma C.

PLoS One. 2015 Nov 11;10(11):e0142753. doi: 10.1371/journal.pone.0142753. eCollection 2015.

16.

Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma.

Severino P, Oliveira LS, Andreghetto FM, Torres N, Curioni O, Cury PM, Toporcov TN, Paschoal AR, Durham AM.

BMC Med Genomics. 2015 Jun 24;8:31. doi: 10.1186/s12920-015-0102-4.

17.

Emerging applications of read profiles towards the functional annotation of the genome.

Pundhir S, Poirazi P, Gorodkin J.

Front Genet. 2015 May 19;6:188. doi: 10.3389/fgene.2015.00188. eCollection 2015. Review.

18.

Systematic Genome-wide Screening and Prediction of microRNAs in EBOV During the 2014 Ebolavirus Outbreak.

Teng Y, Wang Y, Zhang X, Liu W, Fan H, Yao H, Lin B, Zhu P, Yuan W, Tong Y, Cao W.

Sci Rep. 2015 May 26;5:9912. doi: 10.1038/srep09912.

19.

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.

Karathanasis N, Tsamardinos I, Poirazi P.

PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151. eCollection 2015.

20.

Identification and validation of a novel microRNA-like molecule derived from a cytoplasmic RNA virus antigenome by bioinformatics and experimental approaches.

Shi J, Duan Z, Sun J, Wu M, Wang B, Zhang J, Wang H, Hu N, Hu Y.

Virol J. 2014 Jul 1;11:121. doi: 10.1186/1743-422X-11-121.

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