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Items: 1 to 20 of 45

1.

Nit1 is a metabolite repair enzyme that hydrolyzes deaminated glutathione.

Peracchi A, Veiga-da-Cunha M, Kuhara T, Ellens KW, Paczia N, Stroobant V, Seliga AK, Marlaire S, Jaisson S, Bommer GT, Sun J, Huebner K, Linster CL, Cooper AJL, Van Schaftingen E.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3233-E3242. doi: 10.1073/pnas.1613736114. Epub 2017 Apr 3.

2.

YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function.

Burkhart BJ, Schwalen CJ, Mann G, Naismith JH, Mitchell DA.

Chem Rev. 2017 Apr 26;117(8):5389-5456. doi: 10.1021/acs.chemrev.6b00623. Epub 2017 Mar 3.

PMID:
28256131
3.

InterPro in 2017-beyond protein family and domain annotations.

Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL.

Nucleic Acids Res. 2017 Jan 4;45(D1):D190-D199. doi: 10.1093/nar/gkw1107. Epub 2016 Nov 29.

4.

Assignment of function to a domain of unknown function: DUF1537 is a new kinase family in catabolic pathways for acid sugars.

Zhang X, Carter MS, Vetting MW, San Francisco B, Zhao S, Al-Obaidi NF, Solbiati JO, Thiaville JJ, de Crécy-Lagard V, Jacobson MP, Almo SC, Gerlt JA.

Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4161-9. doi: 10.1073/pnas.1605546113. Epub 2016 Jul 11.

5.

Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering.

Boari de Lima E, Meira W Júnior, Melo-Minardi RC.

PLoS Comput Biol. 2016 Jun 27;12(6):e1005001. doi: 10.1371/journal.pcbi.1005001. eCollection 2016 Jun.

6.

Whole cell biocatalysts: essential workers from Nature to the industry.

de Carvalho CC.

Microb Biotechnol. 2017 Mar;10(2):250-263. doi: 10.1111/1751-7915.12363. Epub 2016 May 3. Review.

7.

Developing of the Computer Method for Annotation of Bacterial Genes.

Golyshev MA, Korotkov EV.

Adv Bioinformatics. 2015;2015:635437. doi: 10.1155/2015/635437. Epub 2015 Dec 6.

8.

Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium.

Humphreys CM, McLean S, Schatschneider S, Millat T, Henstra AM, Annan FJ, Breitkopf R, Pander B, Piatek P, Rowe P, Wichlacz AT, Woods C, Norman R, Blom J, Goesman A, Hodgman C, Barrett D, Thomas NR, Winzer K, Minton NP.

BMC Genomics. 2015 Dec 21;16:1085. doi: 10.1186/s12864-015-2287-5.

9.

Ultrahigh-throughput discovery of promiscuous enzymes by picodroplet functional metagenomics.

Colin PY, Kintses B, Gielen F, Miton CM, Fischer G, Mohamed MF, Hyvönen M, Morgavi DP, Janssen DB, Hollfelder F.

Nat Commun. 2015 Dec 7;6:10008. doi: 10.1038/ncomms10008.

10.

Comparative Phylogenomics of Pathogenic and Nonpathogenic Species.

Whiston E, Taylor JW.

G3 (Bethesda). 2015 Nov 27;6(2):235-44. doi: 10.1534/g3.115.022806.

11.

Advanced Applications of RNA Sequencing and Challenges.

Han Y, Gao S, Muegge K, Zhang W, Zhou B.

Bioinform Biol Insights. 2015 Nov 15;9(Suppl 1):29-46. doi: 10.4137/BBI.S28991. eCollection 2015. Review.

12.

Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome.

Sangal V, Blom J, Sutcliffe IC, von Hunolstein C, Burkovski A, Hoskisson PA.

BMC Genomics. 2015 Oct 9;16:765. doi: 10.1186/s12864-015-1980-8.

13.

Mini-Tn7 vectors for stable expression of diguanylate cyclase PleD* in Gram-negative bacteria.

Romero-Jiménez L, Rodríguez-Carbonell D, Gallegos MT, Sanjuán J, Pérez-Mendoza D.

BMC Microbiol. 2015 Sep 29;15:190. doi: 10.1186/s12866-015-0521-6.

14.

Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: BIOCHEMICAL, STRUCTURAL, AND EVOLUTIONARY INSIGHTS.

Kuznetsova E, Nocek B, Brown G, Makarova KS, Flick R, Wolf YI, Khusnutdinova A, Evdokimova E, Jin K, Tan K, Hanson AD, Hasnain G, Zallot R, de Crécy-Lagard V, Babu M, Savchenko A, Joachimiak A, Edwards AM, Koonin EV, Yakunin AF.

J Biol Chem. 2015 Jul 24;290(30):18678-98. doi: 10.1074/jbc.M115.657916. Epub 2015 Jun 12.

15.

Determining microbial products and identifying molecular targets in the human microbiome.

Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C.

Cell Metab. 2014 Nov 4;20(5):731-41. doi: 10.1016/j.cmet.2014.10.003. Epub 2014 Nov 4. Review.

16.

Expanded microbial genome coverage and improved protein family annotation in the COG database.

Galperin MY, Makarova KS, Wolf YI, Koonin EV.

Nucleic Acids Res. 2015 Jan;43(Database issue):D261-9. doi: 10.1093/nar/gku1223. Epub 2014 Nov 26.

17.

Conserved sequence-specific lincRNA-steroid receptor interactions drive transcriptional repression and direct cell fate.

Hudson WH, Pickard MR, de Vera IM, Kuiper EG, Mourtada-Maarabouni M, Conn GL, Kojetin DJ, Williams GT, Ortlund EA.

Nat Commun. 2014 Nov 7;5:5395. doi: 10.1038/ncomms6395.

18.

Expanding the Halohydrin Dehalogenase Enzyme Family: Identification of Novel Enzymes by Database Mining.

Schallmey M, Koopmeiners J, Wells E, Wardenga R, Schallmey A.

Appl Environ Microbiol. 2014 Dec;80(23):7303-15. doi: 10.1128/AEM.01985-14. Epub 2014 Sep 19.

19.

Towards an informative mutant phenotype for every bacterial gene.

Deutschbauer A, Price MN, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM.

J Bacteriol. 2014 Oct;196(20):3643-55. doi: 10.1128/JB.01836-14. Epub 2014 Aug 11.

20.

BEM46 shows eisosomal localization and association with tryptophan-derived auxin pathway in Neurospora crassa.

Kollath-Leiß K, Bönniger C, Sardar P, Kempken F.

Eukaryot Cell. 2014 Aug;13(8):1051-63. doi: 10.1128/EC.00061-14. Epub 2014 Jun 13.

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