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Items: 1 to 20 of 27

1.

A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis.

Makrantoni V, Ciesiolka A, Lawless C, Fernius J, Marston A, Lydall D, Stark MJR.

G3 (Bethesda). 2017 Sep 7;7(9):3203-3215. doi: 10.1534/g3.117.300089.

2.

Capturing protein communities by structural proteomics in a thermophilic eukaryote.

Kastritis PL, O'Reilly FJ, Bock T, Li Y, Rogon MZ, Buczak K, Romanov N, Betts MJ, Bui KH, Hagen WJ, Hennrich ML, Mackmull MT, Rappsilber J, Russell RB, Bork P, Beck M, Gavin AC.

Mol Syst Biol. 2017 Jul 25;13(7):936. doi: 10.15252/msb.20167412.

3.

Growth condition dependency is the major cause of non-responsiveness upon genetic perturbation.

Amini S, Holstege FC, Kemmeren P.

PLoS One. 2017 Mar 3;12(3):e0173432. doi: 10.1371/journal.pone.0173432. eCollection 2017.

4.

A global genetic interaction network maps a wiring diagram of cellular function.

Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, Lin ZY, Kuzmin E, Nelson J, Piotrowski JS, Srikumar T, Bahr S, Chen Y, Deshpande R, Kurat CF, Li SC, Li Z, Usaj MM, Okada H, Pascoe N, San Luis BJ, Sharifpoor S, Shuteriqi E, Simpkins SW, Snider J, Suresh HG, Tan Y, Zhu H, Malod-Dognin N, Janjic V, Przulj N, Troyanskaya OG, Stagljar I, Xia T, Ohya Y, Gingras AC, Raught B, Boutros M, Steinmetz LM, Moore CL, Rosebrock AP, Caudy AA, Myers CL, Andrews B, Boone C.

Science. 2016 Sep 23;353(6306). pii: aaf1420.

5.

A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes.

Zugasti O, Thakur N, Belougne J, Squiban B, Kurz CL, Soulé J, Omi S, Tichit L, Pujol N, Ewbank JJ.

BMC Biol. 2016 Apr 29;14:35. doi: 10.1186/s12915-016-0256-3.

6.

A genetic network that suppresses genome rearrangements in Saccharomyces cerevisiae and contains defects in cancers.

Putnam CD, Srivatsan A, Nene RV, Martinez SL, Clotfelter SP, Bell SN, Somach SB, de Souza JE, Fonseca AF, de Souza SJ, Kolodner RD.

Nat Commun. 2016 Apr 13;7:11256. doi: 10.1038/ncomms11256.

7.

Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains.

Isasa M, Rose CM, Elsasser S, Navarrete-Perea J, Paulo JA, Finley DJ, Gygi SP.

J Proteome Res. 2015 Dec 4;14(12):5306-17. doi: 10.1021/acs.jproteome.5b00802. Epub 2015 Nov 4.

8.

Acetylome profiling reveals overlap in the regulation of diverse processes by sirtuins, gcn5, and esa1.

Downey M, Johnson JR, Davey NE, Newton BW, Johnson TL, Galaang S, Seller CA, Krogan N, Toczyski DP.

Mol Cell Proteomics. 2015 Jan;14(1):162-76. doi: 10.1074/mcp.M114.043141. Epub 2014 Nov 7.

9.

Cell cycle population effects in perturbation studies.

O'Duibhir E, Lijnzaad P, Benschop JJ, Lenstra TL, van Leenen D, Groot Koerkamp MJ, Margaritis T, Brok MO, Kemmeren P, Holstege FC.

Mol Syst Biol. 2014 Jun 21;10:732. doi: 10.15252/msb.20145172.

10.
11.

Mapping of protein-protein interactions of E. coli RNA polymerase with microfluidic mechanical trapping.

Bates SR, Quake SR.

PLoS One. 2014 Mar 18;9(3):e91542. doi: 10.1371/journal.pone.0091542. eCollection 2014.

12.

tRNA 3' processing in yeast involves tRNase Z, Rex1, and Rrp6.

Skowronek E, Grzechnik P, Späth B, Marchfelder A, Kufel J.

RNA. 2014 Jan;20(1):115-30. doi: 10.1261/rna.041467.113. Epub 2013 Nov 18.

13.

From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.

Braberg H, Jin H, Moehle EA, Chan YA, Wang S, Shales M, Benschop JJ, Morris JH, Qiu C, Hu F, Tang LK, Fraser JS, Holstege FC, Hieter P, Guthrie C, Kaplan CD, Krogan NJ.

Cell. 2013 Aug 15;154(4):775-88. doi: 10.1016/j.cell.2013.07.033. Epub 2013 Aug 8.

14.

Genome evolution predicts genetic interactions in protein complexes and reveals cancer drug targets.

Lu X, Kensche PR, Huynen MA, Notebaart RA.

Nat Commun. 2013;4:2124. doi: 10.1038/ncomms3124.

15.

Evolutionary rate heterogeneity of core and attachment proteins in yeast protein complexes.

Chakraborty S, Ghosh TC.

Genome Biol Evol. 2013;5(7):1366-75. doi: 10.1093/gbe/evt096.

16.

Network rewiring is an important mechanism of gene essentiality change.

Kim J, Kim I, Han SK, Bowie JU, Kim S.

Sci Rep. 2012;2:900. doi: 10.1038/srep00900. Epub 2012 Nov 29.

17.

Cluster-based assessment of protein-protein interaction confidence.

Kamburov A, Grossmann A, Herwig R, Stelzl U.

BMC Bioinformatics. 2012 Oct 10;13:262. doi: 10.1186/1471-2105-13-262.

18.

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress.

Tkach JM, Yimit A, Lee AY, Riffle M, Costanzo M, Jaschob D, Hendry JA, Ou J, Moffat J, Boone C, Davis TN, Nislow C, Brown GW.

Nat Cell Biol. 2012 Sep;14(9):966-76. doi: 10.1038/ncb2549. Epub 2012 Jul 29.

19.

Identification of yeast genes that confer resistance to chitosan oligosaccharide (COS) using chemogenomics.

Jaime MD, Lopez-Llorca LV, Conesa A, Lee AY, Proctor M, Heisler LE, Gebbia M, Giaever G, Westwood JT, Nislow C.

BMC Genomics. 2012 Jun 22;13:267. doi: 10.1186/1471-2164-13-267.

20.

A quantitative analysis of monochromaticity in genetic interaction networks.

Hsu CH, Wang TY, Chu HT, Kao CY, Chen KC.

BMC Bioinformatics. 2011;12 Suppl 13:S16. doi: 10.1186/1471-2105-12-S13-S16. Epub 2011 Nov 30.

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