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Items: 1 to 20 of 64


Disease causality extraction based on lexical semantics and document-clause frequency from biomedical literature.

Lee DG, Shin H.

BMC Med Inform Decis Mak. 2017 May 18;17(Suppl 1):53. doi: 10.1186/s12911-017-0448-y.


Biomedical event trigger detection by dependency-based word embedding.

Wang J, Zhang J, An Y, Lin H, Yang Z, Zhang Y, Sun Y.

BMC Med Genomics. 2016 Aug 10;9 Suppl 2:45. doi: 10.1186/s12920-016-0203-8.


Coreference resolution improves extraction of Biological Expression Language statements from texts.

Choi M, Liu H, Baumgartner W, Zobel J, Verspoor K.

Database (Oxford). 2016 Jul 3;2016. pii: baw076. doi: 10.1093/database/baw076. Print 2016.


Crowdsourcing the nodulation gene network discovery environment.

Li Y, Jackson SA.

BMC Bioinformatics. 2016 May 26;17(1):223. doi: 10.1186/s12859-016-1089-3.


Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events.

Wu C, Schwartz JM, Brabant G, Peng SL, Nenadic G.

BMC Syst Biol. 2015;9 Suppl 6:S5. doi: 10.1186/1752-0509-9-S6-S5. Epub 2015 Dec 9.


An Overview of Biomolecular Event Extraction from Scientific Documents.

Vanegas JA, Matos S, González F, Oliveira JL.

Comput Math Methods Med. 2015;2015:571381. doi: 10.1155/2015/571381. Epub 2015 Oct 26. Review.


Optimizing graph-based patterns to extract biomedical events from the literature.

Liu H, Verspoor K, Comeau DC, MacKinlay AD, Wilbur W.

BMC Bioinformatics. 2015;16 Suppl 16:S2. doi: 10.1186/1471-2105-16-S16-S2. Epub 2015 Oct 30.


METSP: a maximum-entropy classifier based text mining tool for transporter-substrate identification with semistructured text.

Zhao M, Chen Y, Qu D, Qu H.

Biomed Res Int. 2015;2015:254838. doi: 10.1155/2015/254838. Epub 2015 Oct 1.


Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery.

Gonzalez GH, Tahsin T, Goodale BC, Greene AC, Greene CS.

Brief Bioinform. 2016 Jan;17(1):33-42. doi: 10.1093/bib/bbv087. Epub 2015 Sep 29. Review.


Management of Dynamic Biomedical Terminologies: Current Status and Future Challenges.

Da Silveira M, Dos Reis JC, Pruski C.

Yearb Med Inform. 2015 Aug 13;10(1):125-33. doi: 10.15265/IY-2015-002. Review.


Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.

Pyysalo S, Ohta T, Rak R, Rowley A, Chun HW, Jung SJ, Choi SP, Tsujii J, Ananiadou S.

BMC Bioinformatics. 2015;16 Suppl 10:S2. doi: 10.1186/1471-2105-16-S10-S2. Epub 2015 Jul 13.


Ferret: a sentence-based literature scanning system.

Srinivasan P, Zhang XN, Bouten R, Chang C.

BMC Bioinformatics. 2015 Jun 20;16:198. doi: 10.1186/s12859-015-0630-0.


PALM-IST: Pathway Assembly from Literature Mining--an Information Search Tool.

Mandloi S, Chakrabarti S.

Sci Rep. 2015 May 19;5:10021. doi: 10.1038/srep10021.


Self-training in significance space of support vectors for imbalanced biomedical event data.

Munkhdalai T, Namsrai OE, Ryu K.

BMC Bioinformatics. 2015;16 Suppl 7:S6. doi: 10.1186/1471-2105-16-S7-S6. Epub 2015 Apr 23.


Community challenges in biomedical text mining over 10 years: success, failure and the future.

Huang CC, Lu Z.

Brief Bioinform. 2016 Jan;17(1):132-44. doi: 10.1093/bib/bbv024. Epub 2015 May 1. Review.


The human toxome project.

Bouhifd M, Andersen ME, Baghdikian C, Boekelheide K, Crofton KM, Fornace AJ Jr, Kleensang A, Li H, Livi C, Maertens A, McMullen PD, Rosenberg M, Thomas R, Vantangoli M, Yager JD, Zhao L, Hartung T.

ALTEX. 2015;32(2):112-24. doi: 10.14573/altex.1502091. Epub 2015 Mar 4.


Molecular profiling of thyroid cancer subtypes using large-scale text mining.

Wu C, Schwartz JM, Brabant G, Nenadic G.

BMC Med Genomics. 2014;7 Suppl 3:S3. doi: 10.1186/1755-8794-7-S3-S3. Epub 2014 Dec 8.


Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

Currin A, Swainston N, Day PJ, Kell DB.

Chem Soc Rev. 2015 Mar 7;44(5):1172-239. doi: 10.1039/c4cs00351a. Review.


An unsupervised text mining method for relation extraction from biomedical literature.

Quan C, Wang M, Ren F.

PLoS One. 2014 Jul 18;9(7):e102039. doi: 10.1371/journal.pone.0102039. eCollection 2014.

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