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Items: 20

1.

Progress in genome sequencing will accelerate molecular breeding in cotton (Gossypium spp.).

Yan R, Liang C, Meng Z, Malik W, Zhu T, Zong X, Guo S, Zhang R.

3 Biotech. 2016 Dec;6(2):217. doi: 10.1007/s13205-016-0534-3. Epub 2016 Oct 7. Review.

2.

Construction of BAC contig maps of homoeologous chromosomes A12 and D12 of Gossypium hirsutum L. acc. TM-1.

Lv Y, Ma D, Liang W, Lv Y, Guo W, Hu Y, Zhang T.

Mol Cytogenet. 2015 Jul 28;8:55. doi: 10.1186/s13039-015-0158-z. eCollection 2015.

3.

Molecular markers and cotton genetic improvement: current status and future prospects.

Malik W, Ashraf J, Iqbal MZ, Khan AA, Qayyum A, Ali Abid M, Noor E, Ahmad MQ, Abbasi GH.

ScientificWorldJournal. 2014;2014:607091. doi: 10.1155/2014/607091. Epub 2014 Oct 23. Review.

4.

Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton.

Xie F, Wang Q, Sun R, Zhang B.

J Exp Bot. 2015 Feb;66(3):789-804. doi: 10.1093/jxb/eru437. Epub 2014 Nov 4.

5.
6.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N.

Plant Physiol. 2014 Jan;164(1):412-23. doi: 10.1104/pp.113.228213. Epub 2013 Nov 15.

7.

Whole genome profiling physical map and ancestral annotation of tobacco Hicks Broadleaf.

Sierro N, van Oeveren J, van Eijk MJ, Martin F, Stormo KE, Peitsch MC, Ivanov NV.

Plant J. 2013 Sep;75(5):880-9. doi: 10.1111/tpj.12247. Epub 2013 Jun 26.

8.

Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.).

Lee MK, Zhang Y, Zhang M, Goebel M, Kim HJ, Triplett BA, Stelly DM, Zhang HB.

BMC Genomics. 2013 Mar 28;14:208. doi: 10.1186/1471-2164-14-208.

9.

Distribution and characterization of simple sequence repeats in Gossypium raimondii genome.

Zou C, Lu C, Zhang Y, Song G.

Bioinformation. 2012;8(17):801-6. doi: 10.6026/97320630008801. Epub 2012 Sep 11.

10.

Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information.

Zhao L, Yuanda L, Caiping C, Xiangchao T, Xiangdong C, Wei Z, Hao D, Xiuhua G, Wangzhen G.

BMC Genomics. 2012 Oct 9;13:539. doi: 10.1186/1471-2164-13-539.

11.

Genome physical mapping of polyploids: a BIBAC physical map of cultivated tetraploid cotton, Gossypium hirsutum L.

Zhang M, Zhang Y, Huang JJ, Zhang X, Lee MK, Stelly DM, Zhang HB.

PLoS One. 2012;7(3):e33644. doi: 10.1371/journal.pone.0033644. Epub 2012 Mar 16.

12.

A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome.

Yu JZ, Kohel RJ, Fang DD, Cho J, Van Deynze A, Ulloa M, Hoffman SM, Pepper AE, Stelly DM, Jenkins JN, Saha S, Kumpatla SP, Shah MR, Hugie WV, Percy RG.

G3 (Bethesda). 2012 Jan;2(1):43-58. doi: 10.1534/g3.111.001552. Epub 2012 Jan 1.

13.

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.

BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47.

14.

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC, Paterson AH.

Nucleic Acids Res. 2012 Apr;40(7):e49. doi: 10.1093/nar/gkr1293. Epub 2012 Jan 4.

15.

Characterization of the genome of bald cypress.

Liu W, Thummasuwan S, Sehgal SK, Chouvarine P, Peterson DG.

BMC Genomics. 2011 Nov 11;12:553. doi: 10.1186/1471-2164-12-553.

16.

Size variation in homologous segments across divergent plant genomes.

Lin L, Paterson AH.

Mob Genet Elements. 2011 Jul;1(2):92-96. Epub 2011 Jul 1.

17.

A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.).

Hinchliffe DJ, Turley RB, Naoumkina M, Kim HJ, Tang Y, Yeater KM, Li P, Fang DD.

BMC Genomics. 2011 Sep 9;12:445. doi: 10.1186/1471-2164-12-445.

18.

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.

Saski CA, Feltus FA, Staton ME, Blackmon BP, Ficklin SP, Kuhn DN, Schnell RJ, Shapiro H, Motamayor JC.

BMC Genomics. 2011 Aug 16;12:413. doi: 10.1186/1471-2164-12-413.

19.

Marker-assisted breeding as next-generation strategy for genetic improvement of productivity and quality: can it be realized in cotton?

Boopathi NM, Thiyagu K, Urbi B, Santhoshkumar M, Gopikrishnan A, Aravind S, Swapnashri G, Ravikesavan R.

Int J Plant Genomics. 2011;2011:670104. doi: 10.1155/2011/670104. Epub 2011 Mar 20.

20.

Silencing GhNDR1 and GhMKK2 compromises cotton resistance to Verticillium wilt.

Gao X, Wheeler T, Li Z, Kenerley CM, He P, Shan L.

Plant J. 2011 Apr;66(2):293-305. doi: 10.1111/j.1365-313X.2011.04491.x. Epub 2011 Feb 21.

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