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Items: 1 to 20 of 21

1.

Structural and functional characterization of deep-sea thermophilic bacteriophage GVE2 HNH endonuclease.

Zhang L, Xu D, Huang Y, Zhu X, Rui M, Wan T, Zheng X, Shen Y, Chen X, Ma K, Gong Y.

Sci Rep. 2017 Feb 13;7:42542. doi: 10.1038/srep42542.

2.

DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target.

Shen BW, Heiter DF, Lunnen KD, Wilson GG, Stoddard BL.

Nucleic Acids Res. 2017 Feb 17;45(3):1516-1528. doi: 10.1093/nar/gkw1200. No abstract available.

3.

Tetrameric structure of the restriction DNA glycosylase R.PabI in complex with nonspecific double-stranded DNA.

Wang D, Miyazono KI, Tanokura M.

Sci Rep. 2016 Oct 12;6:35197. doi: 10.1038/srep35197.

4.

On the role of steric clashes in methylation control of restriction endonuclease activity.

Mierzejewska K, Bochtler M, Czapinska H.

Nucleic Acids Res. 2016 Jan 8;44(1):485-95. doi: 10.1093/nar/gkv1341. Epub 2015 Dec 3.

5.

Expression and purification of a single-chain Type IV restriction enzyme Eco94GmrSD and determination of its substrate preference.

He X, Hull V, Thomas JA, Fu X, Gidwani S, Gupta YK, Black LW, Xu SY.

Sci Rep. 2015 May 19;5:9747. doi: 10.1038/srep09747.

6.

Structure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA.

Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X.

Nucleic Acids Res. 2014 Jul;42(12):7947-59. doi: 10.1093/nar/gku497. Epub 2014 Jun 3.

7.

Type II restriction endonucleases--a historical perspective and more.

Pingoud A, Wilson GG, Wende W.

Nucleic Acids Res. 2014 Jul;42(12):7489-527. doi: 10.1093/nar/gku447. Epub 2014 May 30. Review. Erratum in: Nucleic Acids Res. 2016 Sep 19;44(16):8011.

8.

Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII.

Zhuo W, Lai X, Zhang L, Chan SH, Li F, Zhu Z, Yang M, Sun D.

Protein Cell. 2014 May;5(5):357-68. doi: 10.1007/s13238-014-0038-z. Epub 2014 Apr 15.

9.

Staphylococcal pathogenicity island DNA packaging system involving cos-site packaging and phage-encoded HNH endonucleases.

Quiles-Puchalt N, Carpena N, Alonso JC, Novick RP, Marina A, Penad├ęs JR.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):6016-21. doi: 10.1073/pnas.1320538111. Epub 2014 Apr 7.

10.

HNH proteins are a widespread component of phage DNA packaging machines.

Kala S, Cumby N, Sadowski PD, Hyder BZ, Kanelis V, Davidson AR, Maxwell KL.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):6022-7. doi: 10.1073/pnas.1320952111. Epub 2014 Apr 7.

11.

Structure determination and biochemical characterization of a putative HNH endonuclease from Geobacter metallireducens GS-15.

Xu SY, Kuzin AP, Seetharaman J, Gutjahr A, Chan SH, Chen Y, Xiao R, Acton TB, Montelione GT, Tong L.

PLoS One. 2013 Sep 6;8(9):e72114. doi: 10.1371/journal.pone.0072114. eCollection 2013.

12.

Diverse functions of restriction-modification systems in addition to cellular defense.

Vasu K, Nagaraja V.

Microbiol Mol Biol Rev. 2013 Mar;77(1):53-72. doi: 10.1128/MMBR.00044-12. Review.

13.

Natural zinc ribbon HNH endonucleases and engineered zinc finger nicking endonuclease.

Xu SY, Gupta YK.

Nucleic Acids Res. 2013 Jan 7;41(1):378-90. doi: 10.1093/nar/gks1043. Epub 2012 Nov 3.

14.

Solitary restriction endonucleases in prokaryotic genomes.

Ershova AS, Karyagina AS, Vasiliev MO, Lyashchuk AM, Lunin VG, Spirin SA, Alexeevski AV.

Nucleic Acids Res. 2012 Nov 1;40(20):10107-15. doi: 10.1093/nar/gks853. Epub 2012 Sep 10.

15.

Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.

Siwek W, Czapinska H, Bochtler M, Bujnicki JM, Skowronek K.

Nucleic Acids Res. 2012 Aug;40(15):7563-72. doi: 10.1093/nar/gks428. Epub 2012 May 18.

16.

The protein gp74 from the bacteriophage HK97 functions as a HNH endonuclease.

Moodley S, Maxwell KL, Kanelis V.

Protein Sci. 2012 Jun;21(6):809-18. doi: 10.1002/pro.2064. Epub 2012 Apr 23.

17.

Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms.

Taylor GK, Stoddard BL.

Nucleic Acids Res. 2012 Jul;40(12):5189-200. doi: 10.1093/nar/gks226. Epub 2012 Mar 9. Review.

18.

Homing endonucleases: from microbial genetic invaders to reagents for targeted DNA modification.

Stoddard BL.

Structure. 2011 Jan 12;19(1):7-15. doi: 10.1016/j.str.2010.12.003. Review.

19.

Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis.

Sokolowska M, Czapinska H, Bochtler M.

Nucleic Acids Res. 2011 Mar;39(4):1554-64. doi: 10.1093/nar/gkq821. Epub 2010 Oct 8.

20.

DNA intercalation without flipping in the specific ThaI-DNA complex.

Firczuk M, Wojciechowski M, Czapinska H, Bochtler M.

Nucleic Acids Res. 2011 Jan;39(2):744-54. doi: 10.1093/nar/gkq834. Epub 2010 Sep 21.

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