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Items: 1 to 20 of 298


Transcription factor clusters regulate genes in eukaryotic cells.

Wollman AJ, Shashkova S, Hedlund EG, Friemann R, Hohmann S, Leake MC.

Elife. 2017 Aug 25;6. pii: e27451. doi: 10.7554/eLife.27451.


The three-dimensional genome organization of Drosophila melanogaster through data integration.

Li Q, Tjong H, Li X, Gong K, Zhou XJ, Chiolo I, Alber F.

Genome Biol. 2017 Jul 31;18(1):145. doi: 10.1186/s13059-017-1264-5.


Recombination at subtelomeres is regulated by physical distance, double-strand break resection and chromatin status.

Batté A, Brocas C, Bordelet H, Hocher A, Ruault M, Adjiri A, Taddei A, Dubrana K.

EMBO J. 2017 Sep 1;36(17):2609-2625. doi: 10.15252/embj.201796631. Epub 2017 Jul 28.


A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi.

Erlendson AA, Friedman S, Freitag M.

Microbiol Spectr. 2017 Jul;5(4). doi: 10.1128/microbiolspec.FUNK-0054-2017.


Genome-wide landscape of position effects on heterogeneous gene expression in Saccharomyces cerevisiae.

Wu XL, Li BZ, Zhang WZ, Song K, Qi H, Dai JB, Yuan YJ.

Biotechnol Biofuels. 2017 Jul 18;10:189. doi: 10.1186/s13068-017-0872-3. eCollection 2017.


Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle.

Lazar-Stefanita L, Scolari VF, Mercy G, Muller H, Guérin TM, Thierry A, Mozziconacci J, Koszul R.

EMBO J. 2017 Sep 15;36(18):2684-2697. doi: 10.15252/embj.201797342. Epub 2017 Jul 20.


Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.

Serra F, Baù D, Goodstadt M, Castillo D, Filion GJ, Marti-Renom MA.

PLoS Comput Biol. 2017 Jul 19;13(7):e1005665. doi: 10.1371/journal.pcbi.1005665. eCollection 2017 Jul.


Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.

Gürsoy G, Xu Y, Liang J.

PLoS Comput Biol. 2017 Jul 13;13(7):e1005658. doi: 10.1371/journal.pcbi.1005658. eCollection 2017 Jul.


Scaffolding of long read assemblies using long range contact information.

Ghurye J, Pop M, Koren S, Bickhart D, Chin CS.

BMC Genomics. 2017 Jul 12;18(1):527. doi: 10.1186/s12864-017-3879-z.


Position effects influencing intrachromosomal repair of a double-strand break in budding yeast.

Wang RW, Lee CS, Haber JE.

PLoS One. 2017 Jul 11;12(7):e0180994. doi: 10.1371/journal.pone.0180994. eCollection 2017.


Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes.

Jourdier E, Baudry L, Poggi-Parodi D, Vicq Y, Koszul R, Margeot A, Marbouty M, Bidard F.

Biotechnol Biofuels. 2017 Jun 12;10:151. doi: 10.1186/s13068-017-0837-6. eCollection 2017.


The Emerging Role of the Cytoskeleton in Chromosome Dynamics.

Spichal M, Fabre E.

Front Genet. 2017 May 19;8:60. doi: 10.3389/fgene.2017.00060. eCollection 2017. Review.


The dynamic three-dimensional organization of the diploid yeast genome.

Kim S, Liachko I, Brickner DG, Cook K, Noble WS, Brickner JH, Shendure J, Dunham MJ.

Elife. 2017 May 24;6. pii: e23623. doi: 10.7554/eLife.23623.


An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data.

Carty M, Zamparo L, Sahin M, González A, Pelossof R, Elemento O, Leslie CS.

Nat Commun. 2017 May 17;8:15454. doi: 10.1038/ncomms15454.


Long-range control of gene expression via RNA-directed DNA methylation.

Rowley MJ, Rothi MH, Böhmdorfer G, Kuciński J, Wierzbicki AT.

PLoS Genet. 2017 May 5;13(5):e1006749. doi: 10.1371/journal.pgen.1006749. eCollection 2017 May.


Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations.

Arbona JM, Herbert S, Fabre E, Zimmer C.

Genome Biol. 2017 May 3;18(1):81. doi: 10.1186/s13059-017-1199-x.


Three distinct mechanisms of long-distance modulation of gene expression in yeast.

Du M, Zhang Q, Bai L.

PLoS Genet. 2017 Apr 20;13(4):e1006736. doi: 10.1371/journal.pgen.1006736. eCollection 2017 Apr.


Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity.

Gaiti F, Jindrich K, Fernandez-Valverde SL, Roper KE, Degnan BM, Tanurdžić M.

Elife. 2017 Apr 11;6. pii: e22194. doi: 10.7554/eLife.22194.


GOTHiC, a probabilistic model to resolve complex biases and to identify real interactions in Hi-C data.

Mifsud B, Martincorena I, Darbo E, Sugar R, Schoenfelder S, Fraser P, Luscombe NM.

PLoS One. 2017 Apr 5;12(4):e0174744. doi: 10.1371/journal.pone.0174744. eCollection 2017. Erratum in: PLoS One. 2017 May 3;12 (5):e0177280.


Tracking the evolution of 3D gene organization demonstrates its connection to phenotypic divergence.

Diament A, Tuller T.

Nucleic Acids Res. 2017 May 5;45(8):4330-4343. doi: 10.1093/nar/gkx205.

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