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Items: 1 to 20 of 34

1.

Identification of expression patterns in the progression of disease stages by integration of transcriptomic data.

Aibar S, Abaigar M, Campos-Laborie FJ, Sánchez-Santos JM, Hernandez-Rivas JM, De Las Rivas J.

BMC Bioinformatics. 2016 Nov 22;17(Suppl 15):432. doi: 10.1186/s12859-016-1290-4.

2.

Transcriptome profiling of gene expression during immunisation trial against Fasciola hepatica: identification of genes and pathways involved in conferring immunoprotection in a murine model.

Rojas-Caraballo J, López-Abán J, Moreno-Pérez DA, Vicente B, Fernández-Soto P, Del Olmo E, Patarroyo MA, Muro A.

BMC Infect Dis. 2017 Jan 23;17(1):94. doi: 10.1186/s12879-017-2205-3.

3.

Dysregulation of long non-coding RNA profiles in human colorectal cancer and its association with overall survival.

Yang L, Xu L, Wang Q, Wang M, An G.

Oncol Lett. 2016 Nov;12(5):4068-4074. Epub 2016 Sep 15.

4.

Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling.

Roson-Burgo B, Sanchez-Guijo F, Del Cañizo C, De Las Rivas J.

BMC Genomics. 2016 Nov 21;17(1):944.

5.

Path2enet: generation of human pathway-derived networks in an expression specific context.

Droste C, De Las Rivas J.

BMC Genomics. 2016 Oct 25;17(Suppl 8):731.

6.

Mining, Validation, and Clinical Significance of Colorectal Cancer (CRC)-Associated lncRNAs.

Sun X, Hu Y, Zhang L, Hu C, Guo G, Mao C, Xu J, Ye S, Huang G, Xue X, Guo A, Shen X.

PLoS One. 2016 Oct 27;11(10):e0164590. doi: 10.1371/journal.pone.0164590. eCollection 2016.

7.

Genomic characterization of liver metastases from colorectal cancer patients.

Sayagués JM, Corchete LA, Gutiérrez ML, Sarasquete ME, Del Mar Abad M, Bengoechea O, Fermiñán E, Anduaga MF, Del Carmen S, Iglesias M, Esteban C, Angoso M, Alcazar JA, García J, Orfao A, Muñoz-Bellvis L.

Oncotarget. 2016 Nov 8;7(45):72908-72922. doi: 10.18632/oncotarget.12140.

8.

A new avenue for obtaining insight into the functional characteristics of long noncoding RNAs associated with estrogen receptor signaling.

Wu L, Xu Q, Zhang H, Li M, Zhu C, Jiang M, Sang X, Zhao Y, Sun Q, Zhao H.

Sci Rep. 2016 Aug 19;6:31716. doi: 10.1038/srep31716.

9.
10.

The long non-coding RNA EPB41L4A-AS2 inhibits tumor proliferation and is associated with favorable prognoses in breast cancer and other solid tumors.

Xu S, Wang P, You Z, Meng H, Mu G, Bai X, Zhang G, Zhang J, Pang D.

Oncotarget. 2016 Apr 12;7(15):20704-17. doi: 10.18632/oncotarget.8007.

11.

Cystatin D locates in the nucleus at sites of active transcription and modulates gene and protein expression.

Ferrer-Mayorga G, Alvarez-Díaz S, Valle N, De Las Rivas J, Mendes M, Barderas R, Canals F, Tapia O, Casal JI, Lafarga M, Muñoz A.

J Biol Chem. 2015 Oct 30;290(44):26533-48. doi: 10.1074/jbc.M115.660175. Epub 2015 Sep 13.

12.

Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition.

Deb A, Kundu S.

PLoS One. 2015 Sep 1;10(9):e0137295. doi: 10.1371/journal.pone.0137295. eCollection 2015.

13.

A long noncoding RNA AB073614 promotes tumorigenesis and predicts poor prognosis in ovarian cancer.

Cheng Z, Guo J, Chen L, Luo N, Yang W, Qu X.

Oncotarget. 2015 Sep 22;6(28):25381-9. doi: 10.18632/oncotarget.4541.

14.

Identification and characterization of the gene expression profiles for protein coding and non-coding RNAs of pancreatic ductal adenocarcinomas.

Gutiérrez ML, Corchete L, Teodosio C, Sarasquete ME, del Mar Abad M, Iglesias M, Esteban C, Sayagues JM, Orfao A, Muñoz-Bellvis L.

Oncotarget. 2015 Aug 7;6(22):19070-86.

15.

Analyse multiple disease subtypes and build associated gene networks using genome-wide expression profiles.

Aibar S, Fontanillo C, Droste C, Roson-Burgo B, Campos-Laborie FJ, Hernandez-Rivas JM, De Las Rivas J.

BMC Genomics. 2015;16 Suppl 5:S3. doi: 10.1186/1471-2164-16-S5-S3. Epub 2015 May 26.

16.

Deregulation of genes related to iron and mitochondrial metabolism in refractory anemia with ring sideroblasts.

del Rey M, Benito R, Fontanillo C, Campos-Laborie FJ, Janusz K, Velasco-Hernández T, Abáigar M, Hernández M, Cuello R, Borrego D, Martín-Zanca D, De Las Rivas J, Mills KI, Hernández-Rivas JM.

PLoS One. 2015 May 8;10(5):e0126555. doi: 10.1371/journal.pone.0126555. eCollection 2015.

17.

Open source libraries and frameworks for biological data visualisation: a guide for developers.

Wang R, Perez-Riverol Y, Hermjakob H, Vizcaíno JA.

Proteomics. 2015 Apr;15(8):1356-74. doi: 10.1002/pmic.201400377. Epub 2015 Feb 5. Review.

18.

A robust estimation of exon expression to identify alternative spliced genes applied to human tissues and cancer samples.

Risueño A, Roson-Burgo B, Dolnik A, Hernandez-Rivas JM, Bullinger L, De Las Rivas J.

BMC Genomics. 2014 Oct 8;15:879. doi: 10.1186/1471-2164-15-879.

19.

A four-long non-coding RNA signature in predicting breast cancer survival.

Meng J, Li P, Zhang Q, Yang Z, Fu S.

J Exp Clin Cancer Res. 2014 Oct 6;33:84. doi: 10.1186/s13046-014-0084-7.

20.

A method for detecting long non-coding RNAs with tiled RNA expression microarrays.

Lund SH, Gudbjartsson DF, Rafnar T, Sigurdsson A, Gudjonsson SA, Gudmundsson J, Stefansson K, Stefansson G.

PLoS One. 2014 Jun 17;9(6):e99899. doi: 10.1371/journal.pone.0099899. eCollection 2014.

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