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Items: 1 to 20 of 37

1.

The Gene Regulatory Network of Lens Induction Is Wired through Meis-Dependent Shadow Enhancers of Pax6.

Antosova B, Smolikova J, Klimova L, Lachova J, Bendova M, Kozmikova I, Machon O, Kozmik Z.

PLoS Genet. 2016 Dec 5;12(12):e1006441. doi: 10.1371/journal.pgen.1006441.

2.

Genetic Analysis of 'PAX6-Negative' Individuals with Aniridia or Gillespie Syndrome.

Ansari M, Rainger J, Hanson IM, Williamson KA, Sharkey F, Harewood L, Sandilands A, Clayton-Smith J, Dollfus H, Bitoun P, Meire F, Fantes J, Franco B, Lorenz B, Taylor DS, Stewart F, Willoughby CE, McEntagart M, Khaw PT, Clericuzio C, Van Maldergem L, Williams D, Newbury-Ecob R, Traboulsi EI, Silva ED, Madlom MM, Goudie DR, Fleck BW, Wieczorek D, Kohlhase J, McTrusty AD, Gardiner C, Yale C, Moore AT, Russell-Eggitt I, Islam L, Lees M, Beales PL, Tuft SJ, Solano JB, Splitt M, Hertz JM, Prescott TE, Shears DJ, Nischal KK, Doco-Fenzy M, Prieur F, Temple IK, Lachlan KL, Damante G, Morrison DA, van Heyningen V, FitzPatrick DR.

PLoS One. 2016 Apr 28;11(4):e0153757. doi: 10.1371/journal.pone.0153757.

3.

To Be Specific or Not: The Critical Relationship Between Hox And TALE Proteins.

Merabet S, Mann RS.

Trends Genet. 2016 Jun;32(6):334-47. doi: 10.1016/j.tig.2016.03.004. Review.

PMID:
27066866
4.

Systems biology of lens development: A paradigm for disease gene discovery in the eye.

Anand D, Lachke SA.

Exp Eye Res. 2016 Mar 16. pii: S0014-4835(16)30040-9. doi: 10.1016/j.exer.2016.03.010. [Epub ahead of print]

PMID:
26992779
5.

Loss of the Homeodomain Transcription Factor Prep1 Perturbs Adult Hematopoiesis in the Bone Marrow.

Yoshioka K, Oda A, Notsu C, Ohtsuka T, Kawai Y, Suzuki S, Nakamura T, Mabuchi Y, Matsuzaki Y, Goitsuka R.

PLoS One. 2015 Aug 18;10(8):e0136107. doi: 10.1371/journal.pone.0136107.

6.

Deficiency of the RNA binding protein caprin2 causes lens defects and features of Peters anomaly.

Dash S, Dang CA, Beebe DC, Lachke SA.

Dev Dyn. 2015 Oct;244(10):1313-27. doi: 10.1002/dvdy.24303.

7.
8.

ChIP-Seq and RNA-Seq analyses identify components of the Wnt and Fgf signaling pathways as Prep1 target genes in mouse embryonic stem cells.

Laurent A, Calabrese M, Warnatz HJ, Yaspo ML, Tkachuk V, Torres M, Blasi F, Penkov D.

PLoS One. 2015 Apr 13;10(4):e0122518. doi: 10.1371/journal.pone.0122518.

9.

Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks.

Cheatle Jarvela AM, Hinman VF.

Evodevo. 2015 Jan 29;6(1):3. doi: 10.1186/2041-9139-6-3. Review.

10.

Low affinity binding site clusters confer hox specificity and regulatory robustness.

Crocker J, Abe N, Rinaldi L, McGregor AP, Frankel N, Wang S, Alsawadi A, Valenti P, Plaza S, Payre F, Mann RS, Stern DL.

Cell. 2015 Jan 15;160(1-2):191-203. doi: 10.1016/j.cell.2014.11.041.

11.

Pax6- and Six3-mediated induction of lens cell fate in mouse and human ES cells.

Anchan RM, Lachke SA, Gerami-Naini B, Lindsey J, Ng N, Naber C, Nickerson M, Cavallesco R, Rowan S, Eaton JL, Xi Q, Maas RL.

PLoS One. 2014 Dec 17;9(12):e115106. doi: 10.1371/journal.pone.0115106.

12.

The cellular and molecular mechanisms of vertebrate lens development.

Cvekl A, Ashery-Padan R.

Development. 2014 Dec;141(23):4432-47. doi: 10.1242/dev.107953. Review.

13.

Absence of a simple code: how transcription factors read the genome.

Slattery M, Zhou T, Yang L, Dantas Machado AC, Gordân R, Rohs R.

Trends Biochem Sci. 2014 Sep;39(9):381-99. doi: 10.1016/j.tibs.2014.07.002. Review.

14.

Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks.

Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF.

Mol Biol Evol. 2014 Oct;31(10):2672-88. doi: 10.1093/molbev/msu213.

15.

On the identification of potential regulatory variants within genome wide association candidate SNP sets.

Chen CY, Chang IS, Hsiung CA, Wasserman WW.

BMC Med Genomics. 2014 Jun 11;7:34. doi: 10.1186/1755-8794-7-34.

16.

Protein-DNA binding: complexities and multi-protein codes.

Siggers T, Gordân R.

Nucleic Acids Res. 2014 Feb;42(4):2099-111. doi: 10.1093/nar/gkt1112. Review.

17.

Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution.

Ramos AI, Barolo S.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130018. doi: 10.1098/rstb.2013.0018.

18.

Discriminative motif analysis of high-throughput dataset.

Yao Z, Macquarrie KL, Fong AP, Tapscott SJ, Ruzzo WL, Gentleman RC.

Bioinformatics. 2014 Mar 15;30(6):775-83. doi: 10.1093/bioinformatics/btt615.

19.

Pax6 downregulation mediates abnormal lineage commitment of the ocular surface epithelium in aqueous-deficient dry eye disease.

Chen YT, Chen FY, Vijmasi T, Stephens DN, Gallup M, McNamara NA.

PLoS One. 2013 Oct 15;8(10):e77286. doi: 10.1371/journal.pone.0077286.

20.

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization.

Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, Gonzalez I, Latapie Y, Ferrer P, Rouault H, White KP, Besse P, Hakim V, Aerts S, Payre F, Plaza S.

Genome Biol. 2013 Aug 23;14(8):R86. doi: 10.1186/gb-2013-14-8-r86.

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