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Items: 1 to 20 of 136


FARME DB: a functional antibiotic resistance element database.

Wallace JC, Port JA, Smith MN, Faustman EM.

Database (Oxford). 2017 Jan 10;2017. pii: baw165. doi: 10.1093/database/baw165.


Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine.

Contreras AV, Cocom-Chan B, Hernandez-Montes G, Portillo-Bobadilla T, Resendis-Antonio O.

Front Physiol. 2016 Dec 9;7:606. doi: 10.3389/fphys.2016.00606. Review.


Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases.

Zarafeta D, Moschidi D, Ladoukakis E, Gavrilov S, Chrysina ED, Chatziioannou A, Kublanov I, Skretas G, Kolisis FN.

Sci Rep. 2016 Dec 19;6:38886. doi: 10.1038/srep38886.


IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses.

Narayanasamy S, Jarosz Y, Muller EE, Heintz-Buschart A, Herold M, Kaysen A, Laczny CC, Pinel N, May P, Wilmes P.

Genome Biol. 2016 Dec 16;17(1):260.


A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics.

Tang H, Li S, Ye Y.

PLoS Comput Biol. 2016 Dec 5;12(12):e1005224. doi: 10.1371/journal.pcbi.1005224.


Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes.

Versluis D, Rodriguez de Evgrafov M, Sommer MO, Sipkema D, Smidt H, van Passel MW.

Front Microbiol. 2016 Nov 17;7:1848.


Differential fecal microbiota are retained in broiler chicken lines divergently selected for fatness traits.

Hou Q, Kwok LY, Zheng Y, Wang L, Guo Z, Zhang J, Huang W, Wang Y, Leng L, Li H, Zhang H.

Sci Rep. 2016 Nov 23;6:37376. doi: 10.1038/srep37376.


Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome.

Frank JA, Arntzen MØ, Sun L, Hagen LH, McHardy AC, Horn SJ, Eijsink VG, Schnürer A, Pope PB.

mSystems. 2016 Sep 13;1(5). pii: e00092-16.


Quantitative Metaproteomics Highlight the Metabolic Contributions of Uncultured Phylotypes in a Thermophilic Anaerobic Digester.

Hagen LH, Frank JA, Zamanzadeh M, Eijsink VG, Pope PB, Horn SJ, Arntzen MØ.

Appl Environ Microbiol. 2016 Dec 30;83(2). pii: e01955-16. doi: 10.1128/AEM.01955-16.


Developmental dynamics of the preterm infant gut microbiota and antibiotic resistome.

Gibson MK, Wang B, Ahmadi S, Burnham CA, Tarr PI, Warner BB, Dantas G.

Nat Microbiol. 2016 Mar 7;1:16024. doi: 10.1038/nmicrobiol.2016.24.


Species Divergence vs. Functional Convergence Characterizes Crude Oil Microbial Community Assembly.

Nie Y, Zhao JY, Tang YQ, Guo P, Yang Y, Wu XL, Zhao F.

Front Microbiol. 2016 Aug 12;7:1254. doi: 10.3389/fmicb.2016.01254.


SAR11 bacteria linked to ocean anoxia and nitrogen loss.

Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ.

Nature. 2016 Aug 11;536(7615):179-83.


Discovery of new cellulases from the metagenome by a metagenomics-guided strategy.

Yang C, Xia Y, Qu H, Li AD, Liu R, Wang Y, Zhang T.

Biotechnol Biofuels. 2016 Jul 4;9:138. doi: 10.1186/s13068-016-0557-3.


HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts.

Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJ, Webster NS, Rattei T.

Front Microbiol. 2016 Jun 9;7:822. doi: 10.3389/fmicb.2016.00822.


MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota.

Zhang X, Ning Z, Mayne J, Moore JI, Li J, Butcher J, Deeke SA, Chen R, Chiang CK, Wen M, Mack D, Stintzi A, Figeys D.

Microbiome. 2016 Jun 24;4(1):31. doi: 10.1186/s40168-016-0176-z.


Draft genome sequence of Fusicladium effusum, cause of pecan scab.

Bock CH, Chen C, Yu F, Stevenson KL, Wood BW.

Stand Genomic Sci. 2016 Jun 3;11:36. doi: 10.1186/s40793-016-0161-y.


Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness.

Yang H, Huang X, Fang S, Xin W, Huang L, Chen C.

Sci Rep. 2016 Jun 3;6:27427. doi: 10.1038/srep27427.


Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins.

Sharma AK, Kumar S, K H, Dhakan DB, Sharma VK.

BMC Genomics. 2016 May 27;17:411. doi: 10.1186/s12864-016-2753-8.


Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem.

Johnston ER, Rodriguez-R LM, Luo C, Yuan MM, Wu L, He Z, Schuur EA, Luo Y, Tiedje JM, Zhou J, Konstantinidis KT.

Front Microbiol. 2016 Apr 25;7:579. doi: 10.3389/fmicb.2016.00579.

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