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Items: 15

1.

Identifying differentially coexpressed module during HIV disease progression: A multiobjective approach.

Ray S, Maulik U.

Sci Rep. 2017 Mar 7;7(1):86. doi: 10.1038/s41598-017-00090-2.

2.

Peroxisome Proliferator-Activated Receptor γ Regulates the V-Ets Avian Erythroblastosis Virus E26 Oncogene Homolog 1/microRNA-27a Axis to Reduce Endothelin-1 and Endothelial Dysfunction in the Sickle Cell Mouse Lung.

Kang BY, Park K, Kleinhenz JM, Murphy TC, Sutliff RL, Archer D, Hart CM.

Am J Respir Cell Mol Biol. 2017 Jan;56(1):131-144. doi: 10.1165/rcmb.2016-0166OC.

3.

Bioinformatic tools for microRNA dissection.

Akhtar MM, Micolucci L, Islam MS, Olivieri F, Procopio AD.

Nucleic Acids Res. 2016 Jan 8;44(1):24-44. doi: 10.1093/nar/gkv1221. Epub 2015 Nov 17. Review.

5.

Peroxisome Proliferator-Activated Receptor γ and microRNA 98 in Hypoxia-Induced Endothelin-1 Signaling.

Kang BY, Park KK, Kleinhenz JM, Murphy TC, Green DE, Bijli KM, Yeligar SM, Carthan KA, Searles CD, Sutliff RL, Hart CM.

Am J Respir Cell Mol Biol. 2016 Jan;54(1):136-46. doi: 10.1165/rcmb.2014-0337OC.

6.

Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy.

Türei D, Földvári-Nagy L, Fazekas D, Módos D, Kubisch J, Kadlecsik T, Demeter A, Lenti K, Csermely P, Vellai T, Korcsmáros T.

Autophagy. 2015;11(1):155-65. doi: 10.4161/15548627.2014.994346.

7.

Navigating the multilayered organization of eukaryotic signaling: a new trend in data integration.

Santra T, Kolch W, Kholodenko BN.

PLoS Comput Biol. 2014 Feb 13;10(2):e1003385. doi: 10.1371/journal.pcbi.1003385. eCollection 2014 Feb. Review.

8.

A systems' biology approach to study microRNA-mediated gene regulatory networks.

Lai X, Bhattacharya A, Schmitz U, Kunz M, Vera J, Wolkenhauer O.

Biomed Res Int. 2013;2013:703849. doi: 10.1155/2013/703849. Epub 2013 Nov 17.

9.

NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2.

Türei D, Papp D, Fazekas D, Földvári-Nagy L, Módos D, Lenti K, Csermely P, Korcsmáros T.

Oxid Med Cell Longev. 2013;2013:737591. doi: 10.1155/2013/737591. Epub 2013 Apr 17.

10.

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review.

Csermely P, Korcsmáros T, Kiss HJ, London G, Nussinov R.

Pharmacol Ther. 2013 Jun;138(3):333-408. doi: 10.1016/j.pharmthera.2013.01.016. Epub 2013 Feb 4. Review.

11.

SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks.

Fazekas D, Koltai M, Türei D, Módos D, Pálfy M, Dúl Z, Zsákai L, Szalay-Bekő M, Lenti K, Farkas IJ, Vellai T, Csermely P, Korcsmáros T.

BMC Syst Biol. 2013 Jan 18;7:7. doi: 10.1186/1752-0509-7-7.

12.

Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater.

Xiao ZD, Diao LT, Yang JH, Xu H, Huang MB, Deng YJ, Zhou H, Qu LH.

Nucleic Acids Res. 2013 Jan 7;41(1):e5. doi: 10.1093/nar/gks821. Epub 2012 Aug 31.

13.

Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs.

Lai X, Schmitz U, Gupta SK, Bhattacharya A, Kunz M, Wolkenhauer O, Vera J.

Nucleic Acids Res. 2012 Oct;40(18):8818-34. doi: 10.1093/nar/gks657. Epub 2012 Jul 13.

14.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

15.

MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model.

Le Béchec A, Portales-Casamar E, Vetter G, Moes M, Zindy PJ, Saumet A, Arenillas D, Theillet C, Wasserman WW, Lecellier CH, Friederich E.

BMC Bioinformatics. 2011 Mar 4;12:67. doi: 10.1186/1471-2105-12-67.

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