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Items: 20

1.

Discovery and validation of information theory-based transcription factor and cofactor binding site motifs.

Lu R, Mucaki EJ, Rogan PK.

Nucleic Acids Res. 2017 Mar 17;45(5):e27. doi: 10.1093/nar/gkw1036.

2.

MicroRNA-363 and GATA-1 are regulated by HIF-1α in K562 cells under hypoxia.

Xie Y, Li W, Feng J, Wu T, Li J.

Mol Med Rep. 2016 Sep;14(3):2503-10. doi: 10.3892/mmr.2016.5578. Epub 2016 Jul 29.

3.

High Fractional Occupancy of a Tandem Maf Recognition Element and Its Role in Long-Range β-Globin Gene Regulation.

Stees JR, Hossain MA, Sunose T, Kudo Y, Pardo CE, Nabilsi NH, Darst RP, Poudyal R, Igarashi K, Huang S, Kladde MP, Bungert J.

Mol Cell Biol. 2015 Oct 26;36(2):238-50. doi: 10.1128/MCB.00723-15.

4.

Comparison of DNA methylation profiles in human fetal and adult red blood cell progenitors.

Lessard S, Beaudoin M, Benkirane K, Lettre G.

Genome Med. 2015 Jan 20;7(1):1. doi: 10.1186/s13073-014-0122-2. eCollection 2015.

5.

Chromatin looping and eRNA transcription precede the transcriptional activation of gene in the β-globin locus.

Kim YW, Lee S, Yun J, Kim A.

Biosci Rep. 2015 Mar 18;35(2). pii: e00179. doi: 10.1042/BSR20140126.

6.

Rare and low-frequency coding variants in CXCR2 and other genes are associated with hematological traits.

Auer PL, Teumer A, Schick U, O'Shaughnessy A, Lo KS, Chami N, Carlson C, de Denus S, Dubé MP, Haessler J, Jackson RD, Kooperberg C, Perreault LP, Nauck M, Peters U, Rioux JD, Schmidt F, Turcot V, Völker U, Völzke H, Greinacher A, Hsu L, Tardif JC, Diaz GA, Reiner AP, Lettre G.

Nat Genet. 2014 Jun;46(6):629-34. doi: 10.1038/ng.2962. Epub 2014 Apr 28.

7.

Dissecting the function of the adult β-globin downstream promoter region using an artificial zinc finger DNA-binding domain.

Barrow JJ, Li Y, Hossain M, Huang S, Bungert J.

Nucleic Acids Res. 2014 Apr;42(7):4363-74. doi: 10.1093/nar/gku107. Epub 2014 Feb 4.

8.

RUNX1 and NF-E2 upregulation is not specific for MPNs, but is seen in polycythemic disorders with augmented HIF signaling.

Kapralova K, Lanikova L, Lorenzo F, Song J, Horvathova M, Divoky V, Prchal JT.

Blood. 2014 Jan 16;123(3):391-4. doi: 10.1182/blood-2013-10-534222. Epub 2013 Dec 2.

9.

Recruitment of transcription complexes to enhancers and the role of enhancer transcription.

Stees JS, Varn F, Huang S, Strouboulis J, Bungert J.

Biology (Basel). 2012 Dec 5;1(3):778-93. doi: 10.3390/biology1030778.

10.

Cell-cycle specific association of transcription factors and RNA polymerase ii with the human β-globin gene locus.

Rosenberg M, Fan AX, Lin IJ, Liang SY, Bungert J.

J Cell Biochem. 2013 Sep;114(9):1997-2006. doi: 10.1002/jcb.24542.

11.

EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination.

Yien YY, Bieker JJ.

Mol Cell Biol. 2013 Jan;33(1):4-13. doi: 10.1128/MCB.01058-12. Epub 2012 Oct 22. Review.

12.

Neutralizing the function of a β-globin-associated cis-regulatory DNA element using an artificial zinc finger DNA-binding domain.

Barrow JJ, Masannat J, Bungert J.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17948-53. doi: 10.1073/pnas.1207677109. Epub 2012 Oct 16.

13.

A tissue-specific chromatin loop activates the erythroid ankyrin-1 promoter.

Yocum AO, Steiner LA, Seidel NE, Cline AP, Rout ED, Lin JY, Wong C, Garrett LJ, Gallagher PG, Bodine DM.

Blood. 2012 Oct 25;120(17):3586-93. doi: 10.1182/blood-2012-08-450262. Epub 2012 Sep 11.

14.

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.

Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y, Rando OJ, Birney E, Myers RM, Noble WS, Snyder M, Weng Z.

Genome Res. 2012 Sep;22(9):1798-812. doi: 10.1101/gr.139105.112.

15.

An expansive human regulatory lexicon encoded in transcription factor footprints.

Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212.

16.

Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation.

Li B, Ding L, Li W, Story MD, Pace BS.

BMC Genomics. 2012 Apr 26;13:153. doi: 10.1186/1471-2164-13-153.

17.

Resveratrol ameliorates TNFα-mediated suppression of erythropoiesis in human CD34(+) cells via modulation of NF-κB signalling.

Jeong JY, Silver M, Parnes A, Nikiforow S, Berliner N, Vanasse GJ.

Br J Haematol. 2011 Oct;155(1):93-101. doi: 10.1111/j.1365-2141.2011.08800.x. Epub 2011 Jul 18.

18.

The distinctive roles of erythroid specific activator GATA-1 and NF-E2 in transcription of the human fetal γ-globin genes.

Woon Kim Y, Kim S, Geun Kim C, Kim A.

Nucleic Acids Res. 2011 Sep 1;39(16):6944-55. doi: 10.1093/nar/gkr253. Epub 2011 May 24.

19.

Role of helix-loop-helix proteins during differentiation of erythroid cells.

Anantharaman A, Lin IJ, Barrow J, Liang SY, Masannat J, Strouboulis J, Huang S, Bungert J.

Mol Cell Biol. 2011 Apr;31(7):1332-43. doi: 10.1128/MCB.01186-10. Epub 2011 Jan 31. Review.

20.

Ikaros interacts with P-TEFb and cooperates with GATA-1 to enhance transcription elongation.

Bottardi S, Zmiri FA, Bourgoin V, Ross J, Mavoungou L, Milot E.

Nucleic Acids Res. 2011 May;39(9):3505-19. doi: 10.1093/nar/gkq1271. Epub 2011 Jan 17.

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