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Items: 1 to 20 of 104

1.

Genetic-epigenetic interactions in cis: a major focus in the post-GWAS era.

Do C, Shearer A, Suzuki M, Terry MB, Gelernter J, Greally JM, Tycko B.

Genome Biol. 2017 Jun 19;18(1):120. doi: 10.1186/s13059-017-1250-y. Review.

2.

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.

Cheung WA, Shao X, Morin A, Siroux V, Kwan T, Ge B, Aïssi D, Chen L, Vasquez L, Allum F, Guénard F, Bouzigon E, Simon MM, Boulier E, Redensek A, Watt S, Datta A, Clarke L, Flicek P, Mead D, Paul DS, Beck S, Bourque G, Lathrop M, Tchernof A, Vohl MC, Demenais F, Pin I, Downes K, Stunnenberg HG, Soranzo N, Pastinen T, Grundberg E.

Genome Biol. 2017 Mar 10;18(1):50. doi: 10.1186/s13059-017-1173-7.

3.

Genome-wide methylation data mirror ancestry information.

Rahmani E, Shenhav L, Schweiger R, Yousefi P, Huen K, Eskenazi B, Eng C, Huntsman S, Hu D, Galanter J, Oh SS, Waldenberger M, Strauch K, Grallert H, Meitinger T, Gieger C, Holland N, Burchard EG, Zaitlen N, Halperin E.

Epigenetics Chromatin. 2017 Jan 3;10:1. doi: 10.1186/s13072-016-0108-y. eCollection 2017.

4.

Finding potential cis-regulatory loci using allele-specific chromatin accessibility as weights in a kernel-based variance component test.

Peralta JM, Almeida M, Abraham LJ, Moses E, Blangero J.

BMC Proc. 2016 Oct 18;10(Suppl 7):103-108. eCollection 2016.

5.

The Future is The Past: Methylation QTLs in Schizophrenia.

Hoffmann A, Ziller M, Spengler D.

Genes (Basel). 2016 Nov 24;7(12). pii: E104. Review.

6.

DNA methylation: conducting the orchestra from exposure to phenotype?

Leenen FA, Muller CP, Turner JD.

Clin Epigenetics. 2016 Sep 6;8:92. doi: 10.1186/s13148-016-0256-8. eCollection 2016. Review.

7.

Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation.

Do C, Lang CF, Lin J, Darbary H, Krupska I, Gaba A, Petukhova L, Vonsattel JP, Gallagher MP, Goland RS, Clynes RA, Dwork A, Kral JG, Monk C, Christiano AM, Tycko B.

Am J Hum Genet. 2016 May 5;98(5):934-55. doi: 10.1016/j.ajhg.2016.03.027.

8.

Allele-Skewed DNA Modification in the Brain: Relevance to a Schizophrenia GWAS.

Gagliano SA, Ptak C, Mak DY, Shamsi M, Oh G, Knight J, Boutros PC, Petronis A.

Am J Hum Genet. 2016 May 5;98(5):956-62. doi: 10.1016/j.ajhg.2016.03.006. Epub 2016 Apr 14.

9.

Genome-wide DNA methylation analysis of transient neonatal diabetes type 1 patients with mutations in ZFP57.

Bak M, Boonen SE, Dahl C, Hahnemann JM, Mackay DJ, Tümer Z, Grønskov K, Temple IK, Guldberg P, Tommerup N.

BMC Med Genet. 2016 Apr 14;17:29. doi: 10.1186/s12881-016-0292-4.

10.

PON1 as a model for integration of genetic, epigenetic, and expression data on candidate susceptibility genes.

Huen K, Yousefi P, Street K, Eskenazi B, Holland N.

Environ Epigenet. 2015 Jan;1(1). pii: dvv003. Epub 2015 Sep 11.

11.

Tissue-specific patterns of allelically-skewed DNA methylation.

Marzi SJ, Meaburn EL, Dempster EL, Lunnon K, Paya-Cano JL, Smith RG, Volta M, Troakes C, Schalkwyk LC, Mill J.

Epigenetics. 2016;11(1):24-35. doi: 10.1080/15592294.2015.1127479. Epub 2016 Jan 19.

12.

Analysis of a four generation family reveals the widespread sequence-dependent maintenance of allelic DNA methylation in somatic and germ cells.

Tang A, Huang Y, Li Z, Wan S, Mou L, Yin G, Li N, Xie J, Xia Y, Li X, Luo L, Zhang J, Chen S, Wu S, Sun J, Sun X, Jiang Z, Chen J, Li Y, Wang J, Wang J, Cai Z, Gui Y.

Sci Rep. 2016 Jan 13;6:19260. doi: 10.1038/srep19260.

13.

High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction.

McClay JL, Shabalin AA, Dozmorov MG, Adkins DE, Kumar G, Nerella S, Clark SL, Bergen SE; Swedish Schizophrenia Consortium, Hultman CM, Magnusson PK, Sullivan PF, Aberg KA, van den Oord EJ.

Genome Biol. 2015 Dec 23;16:291. doi: 10.1186/s13059-015-0842-7.

14.

HPA AXIS RELATED GENES AND RESPONSE TO PSYCHOLOGICAL THERAPIES: GENETICS AND EPIGENETICS.

Roberts S, Keers R, Lester KJ, Coleman JR, Breen G, Arendt K, Blatter-Meunier J, Cooper P, Creswell C, Fjermestad K, Havik OE, Herren C, Hogendoorn SM, Hudson JL, Krause K, Lyneham HJ, Morris T, Nauta M, Rapee RM, Rey Y, Schneider S, Schneider SC, Silverman WK, Thastum M, Thirlwall K, Waite P, Eley TC, Wong CC.

Depress Anxiety. 2015 Dec;32(12):861-70. doi: 10.1002/da.22430. Epub 2015 Oct 7.

15.

Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation.

Chatterjee A, Stockwell PA, Rodger EJ, Duncan EJ, Parry MF, Weeks RJ, Morison IM.

Sci Rep. 2015 Nov 27;5:17328. doi: 10.1038/srep17328.

16.

Identification of specific DNA methylation sites on the Y-chromosome as biomarker in prostate cancer.

Yao L, Ren S, Zhang M, Du F, Zhu Y, Yu H, Zhang C, Li X, Yang C, Liu H, Wang D, Meng H, Chang S, Han X, Sun Y, Sun Y.

Oncotarget. 2015 Dec 1;6(38):40611-21. doi: 10.18632/oncotarget.6141.

17.
18.

Epigenetic mechanisms, T-cell activation, and CCR5 genetics interact to regulate T-cell expression of CCR5, the major HIV-1 coreceptor.

Gornalusse GG, Mummidi S, Gaitan AA, Jimenez F, Ramsuran V, Picton A, Rogers K, Manoharan MS, Avadhanam N, Murthy KK, Martinez H, Molano Murillo A, Chykarenko ZA, Hutt R, Daskalakis D, Shostakovich-Koretskaya L, Abdool Karim S, Martin JN, Deeks SG, Hecht F, Sinclair E, Clark RA, Okulicz J, Valentine FT, Martinson N, Tiemessen CT, Ndung'u T, Hunt PW, He W, Ahuja SK.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):E4762-71. doi: 10.1073/pnas.1423228112. Epub 2015 Aug 11.

19.
20.

Implication of a Chromosome 15q15.2 Locus in Regulating UBR1 and Predisposing Smokers to MGMT Methylation in Lung.

Leng S, Wu G, Collins LB, Thomas CL, Tellez CS, Jauregui AR, Picchi MA, Zhang X, Juri DE, Desai D, Amin SG, Crowell RE, Stidley CA, Liu Y, Swenberg JA, Lin Y, Wathelet MG, Gilliland FD, Belinsky SA.

Cancer Res. 2015 Aug 1;75(15):3108-17. doi: 10.1158/0008-5472.CAN-15-0243. Epub 2015 Jul 16.

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