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Items: 1 to 20 of 38

1.

VirusSeeker, a computational pipeline for virus discovery and virome composition analysis.

Zhao G, Wu G, Lim ES, Droit L, Krishnamurthy S, Barouch DH, Virgin HW, Wang D.

Virology. 2017 Mar;503:21-30. doi: 10.1016/j.virol.2017.01.005. Epub 2017 Jan 18.

PMID:
28110145
2.

Duck gut viral metagenome analysis captures snapshot of viral diversity.

Fawaz M, Vijayakumar P, Mishra A, Gandhale PN, Dutta R, Kamble NM, Sudhakar SB, Roychoudhary P, Kumar H, Kulkarni DD, Raut AA.

Gut Pathog. 2016 Jun 9;8:30. doi: 10.1186/s13099-016-0113-5. eCollection 2016 Jun 9.

3.

GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data.

Alves JM, de Oliveira AL, Sandberg TO, Moreno-Gallego JL, de Toledo MA, de Moura EM, Oliveira LS, Durham AM, Mehnert DU, Zanotto PM, Reyes A, Gruber A.

Front Microbiol. 2016 Mar 4;7:269. doi: 10.3389/fmicb.2016.00269. eCollection 2016 Mar 4.

4.

The metagenomic approach and causality in virology.

Castrignano SB, Nagasse-Sugahara TK.

Rev Saude Publica. 2015;49:21. English, Portuguese.

5.

Target-dependent enrichment of virions determines the reduction of high-throughput sequencing in virus discovery.

Jensen RH, Mollerup S, Mourier T, Hansen TA, Fridholm H, Nielsen LP, Willerslev E, Hansen AJ, Vinner L.

PLoS One. 2015 Apr 8;10(4):e0122636. doi: 10.1371/journal.pone.0122636. eCollection 2015 Apr 8.

6.

Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent.

Li L, Deng X, Mee ET, Collot-Teixeira S, Anderson R, Schepelmann S, Minor PD, Delwart E.

J Virol Methods. 2015 Mar;213:139-46. doi: 10.1016/j.jviromet.2014.12.002. Epub 2014 Dec 11.

7.

Is there still room for novel viral pathogens in pediatric respiratory tract infections?

Taboada B, Espinoza MA, Isa P, Aponte FE, Arias-Ortiz MA, Monge-Martínez J, Rodríguez-Vázquez R, Díaz-Hernández F, Zárate-Vidal F, Wong-Chew RM, Firo-Reyes V, del Río-Almendárez CN, Gaitán-Meza J, Villaseñor-Sierra A, Martínez-Aguilar G, Salas-Mier Mdel C, Noyola DE, Pérez-Gónzalez LF, López S, Santos-Preciado JI, Arias CF.

PLoS One. 2014 Nov 20;9(11):e113570. doi: 10.1371/journal.pone.0113570. eCollection 2014 Nov 20.

8.

Reconceptualizing major depressive disorder as an infectious disease.

Canli T.

Biol Mood Anxiety Disord. 2014 Oct 21;4:10. doi: 10.1186/2045-5380-4-10. eCollection 2014 Oct 21.

9.

A survey of overlooked viral infections in biological experiment systems.

Wang Y, Wang H, Xu K, Ni P, Zhang H, Ma J, Yang H, Xu F.

PLoS One. 2014 Aug 21;9(8):e105348. doi: 10.1371/journal.pone.0105348. eCollection 2014 Aug 21.

10.

Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation.

Dinakaran V, Rathinavel A, Pushpanathan M, Sivakumar R, Gunasekaran P, Rajendhran J.

PLoS One. 2014 Aug 18;9(8):e105221. doi: 10.1371/journal.pone.0105221. eCollection 2014 Aug 18.

11.

PhyloFlu, a DNA microarray for determining the phylogenetic origin of influenza A virus gene segments and the genomic fingerprint of viral strains.

Paulin LF, de los D Soto-Del Río M, Sánchez I, Hernández J, Gutiérrez-Ríos RM, López-Martínez I, Wong-Chew RM, Parissi-Crivelli A, Isa P, López S, Arias CF.

J Clin Microbiol. 2014 Mar;52(3):803-13. doi: 10.1128/JCM.03134-13. Epub 2013 Dec 18.

12.

Discovery of functional genomic motifs in viruses with ViReMa-a Virus Recombination Mapper-for analysis of next-generation sequencing data.

Routh A, Johnson JE.

Nucleic Acids Res. 2014 Jan;42(2):e11. doi: 10.1093/nar/gkt916. Epub 2013 Oct 16.

13.

Sequence recombination and conservation of Varroa destructor virus-1 and deformed wing virus in field collected honey bees (Apis mellifera).

Wang H, Xie J, Shreeve TG, Ma J, Pallett DW, King LA, Possee RD.

PLoS One. 2013 Sep 18;8(9):e74508. doi: 10.1371/journal.pone.0074508. eCollection 2013 Sep 18.

14.

Viral categorization and discovery in human circulation by transcriptome sequencing.

Wang W, Zhang X, Xu Y, Di Bisceglie AM, Fan X.

Biochem Biophys Res Commun. 2013 Jul 5;436(3):525-9. doi: 10.1016/j.bbrc.2013.05.139. Epub 2013 Jun 11.

15.

Next-generation sequencing for viruses in children with rapid-onset type 1 diabetes.

Lee HS, Briese T, Winkler C, Rewers M, Bonifacio E, Hyoty H, Pflueger M, Simell O, She JX, Hagopian W, Lernmark A, Akolkar B, Krischer JP, Ziegler AG; TEDDY study group..

Diabetologia. 2013 Aug;56(8):1705-11. doi: 10.1007/s00125-013-2924-y. Epub 2013 May 9.

16.

Virome profiling of bats from Myanmar by metagenomic analysis of tissue samples reveals more novel Mammalian viruses.

He B, Li Z, Yang F, Zheng J, Feng Y, Guo H, Li Y, Wang Y, Su N, Zhang F, Fan Q, Tu C.

PLoS One. 2013 Apr 22;8(4):e61950. doi: 10.1371/journal.pone.0061950. Print 2013. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/68f77773-a2a0-4bfe-b5e6-950dc30b79f9.

17.

Circovirus in tissues of dogs with vasculitis and hemorrhage.

Li L, McGraw S, Zhu K, Leutenegger CM, Marks SL, Kubiski S, Gaffney P, Dela Cruz FN Jr, Wang C, Delwart E, Pesavento PA.

Emerg Infect Dis. 2013 Apr;19(4):534-41. doi: 10.3201/eid1904.121390.

18.

Viral surveillance and discovery.

Lipkin WI, Firth C.

Curr Opin Virol. 2013 Apr;3(2):199-204. doi: 10.1016/j.coviro.2013.03.010. Epub 2013 Apr 17. Review.

19.

PRICE: software for the targeted assembly of components of (Meta) genomic sequence data.

Ruby JG, Bellare P, Derisi JL.

G3 (Bethesda). 2013 May 20;3(5):865-80. doi: 10.1534/g3.113.005967.

20.

Metagenomic detection of viral pathogens in Spanish honeybees: co-infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses.

Granberg F, Vicente-Rubiano M, Rubio-Guerri C, Karlsson OE, Kukielka D, Belák S, Sánchez-Vizcaíno JM.

PLoS One. 2013;8(2):e57459. doi: 10.1371/journal.pone.0057459. Epub 2013 Feb 27.

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