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4β-Hydroxywithanolide E Modulates Alternative Splicing of Apoptotic Genes in Human Hepatocellular Carcinoma Huh-7 Cells.

Lee CC, Chang WH, Chang YS, Liu TY, Chen YC, Wu YC, Chang JG.

Sci Rep. 2017 Aug 4;7(1):7290. doi: 10.1038/s41598-017-07472-6.


Plant epigenomics-deciphering the mechanisms of epigenetic inheritance and plasticity in plants.

Köhler C, Springer N.

Genome Biol. 2017 Jul 6;18(1):132. doi: 10.1186/s13059-017-1260-9. No abstract available.


Comparison of Alternative Splicing Junction Detection Tools Using RNA-Seq Data.

Ding L, Rath E, Bai Y.

Curr Genomics. 2017 Jun;18(3):268-277. doi: 10.2174/1389202918666170215125048. Review.


Wolf-Hirschhorn Syndrome Candidate 1 (whsc1) Functions as a Tumor Suppressor by Governing Cell Differentiation.

Yu C, Yao X, Zhao L, Wang P, Zhang Q, Zhao C, Yao S, Wei Y.

Neoplasia. 2017 Aug;19(8):606-616. doi: 10.1016/j.neo.2017.05.001. Epub 2017 Jun 24.


Chromatin marks and ambient temperature-dependent flowering strike up a novel liaison.

Steffen A, Staiger D.

Genome Biol. 2017 Jun 19;18(1):119. doi: 10.1186/s13059-017-1259-2.


Histone posttranslational modifications predict specific alternative exon subtypes in mammalian brain.

Hu Q, Kim EJ, Feng J, Grant GR, Heller EA.

PLoS Comput Biol. 2017 Jun 13;13(6):e1005602. doi: 10.1371/journal.pcbi.1005602. eCollection 2017 Jun.


Histone H3 lysine 36 methylation affects temperature-induced alternative splicing and flowering in plants.

Pajoro A, Severing E, Angenent GC, Immink RGH.

Genome Biol. 2017 Jun 1;18(1):102. doi: 10.1186/s13059-017-1235-x.


Individual expression features of GPX2, NQO1 and SQSTM1 transcript variants induced by hydrogen peroxide treatment in HeLa cells.

Belanova AA, Smirnov DS, Makarenko MS, Belousova MM, Mashkina EV, Aleksandrova AA, Soldatov AV, Zolotukhin PV.

Genet Mol Biol. 2017 Apr-Jun;40(2):515-524. doi: 10.1590/1678-4685-GMB-2016-0005. Epub 2017 May 29.


Epigenetic modulation associated with carcinogenesis and prognosis of human gastric cancer.

Sonohara F, Inokawa Y, Hayashi M, Kodera Y, Nomoto S.

Oncol Lett. 2017 May;13(5):3363-3368. doi: 10.3892/ol.2017.5912. Epub 2017 Mar 27.


Transcriptional and Post-transcriptional Gene Regulation by Long Non-coding RNA.

Dykes IM, Emanueli C.

Genomics Proteomics Bioinformatics. 2017 Jun;15(3):177-186. doi: 10.1016/j.gpb.2016.12.005. Epub 2017 May 19. Review.


RNA Pol II Dynamics Modulate Co-transcriptional Chromatin Modification, CTD Phosphorylation, and Transcriptional Direction.

Fong N, Saldi T, Sheridan RM, Cortazar MA, Bentley DL.

Mol Cell. 2017 May 18;66(4):546-557.e3. doi: 10.1016/j.molcel.2017.04.016. Epub 2017 May 11.


In mammalian foetal testes, SOX9 regulates expression of its target genes by binding to genomic regions with conserved signatures.

Rahmoun M, Lavery R, Laurent-Chaballier S, Bellora N, Philip GK, Rossitto M, Symon A, Pailhoux E, Cammas F, Chung J, Bagheri-Fam S, Murphy M, Bardwell V, Zarkower D, Boizet-Bonhoure B, Clair P, Harley VR, Poulat F.

Nucleic Acids Res. 2017 May 2. doi: 10.1093/nar/gkx328. [Epub ahead of print]


The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae.

Neves LT, Douglass S, Spreafico R, Venkataramanan S, Kress TL, Johnson TL.

Genes Dev. 2017 Apr 1;31(7):702-717. doi: 10.1101/gad.295188.116.


H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells.

He R, Kidder BL.

Nucleic Acids Res. 2017 Apr 10. doi: 10.1093/nar/gkx251. [Epub ahead of print]


Shaping the cellular landscape with Set2/SETD2 methylation.

McDaniel SL, Strahl BD.

Cell Mol Life Sci. 2017 Sep;74(18):3317-3334. doi: 10.1007/s00018-017-2517-x. Epub 2017 Apr 6. Review.


Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity.

Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG.

Elife. 2017 Mar 27;6. pii: e23249. doi: 10.7554/eLife.23249.


Integration of mRNP formation and export.

Björk P, Wieslander L.

Cell Mol Life Sci. 2017 Aug;74(16):2875-2897. doi: 10.1007/s00018-017-2503-3. Epub 2017 Mar 17. Review.


Cyst Nematode Parasitism Induces Dynamic Changes in the Root Epigenome.

Hewezi T, Lane T, Piya S, Rambani A, Rice JH, Staton M.

Plant Physiol. 2017 May;174(1):405-420. doi: 10.1104/pp.16.01948. Epub 2017 Mar 15.


Gene body DNA methylation in plants.

Bewick AJ, Schmitz RJ.

Curr Opin Plant Biol. 2017 Apr;36:103-110. doi: 10.1016/j.pbi.2016.12.007. Epub 2017 Mar 1. Review.


Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies.

Nettling M, Treutler H, Cerquides J, Grosse I.

BMC Bioinformatics. 2017 Mar 1;18(1):141. doi: 10.1186/s12859-017-1495-1.

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