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Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow.

Brunk E, George KW, Alonso-Gutierrez J, Thompson M, Baidoo E, Wang G, Petzold CJ, McCloskey D, Monk J, Yang L, O'Brien EJ, Batth TS, Martin HG, Feist A, Adams PD, Keasling JD, Palsson BO, Lee TS.

Cell Syst. 2016 May 25;2(5):335-46. doi: 10.1016/j.cels.2016.04.004.


Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli.

Beal J, Haddock-Angelli T, Gershater M, de Mora K, Lizarazo M, Hollenhorst J, Rettberg R; iGEM Interlab Study Contributors..

PLoS One. 2016 Mar 3;11(3):e0150182. doi: 10.1371/journal.pone.0150182. Erratum in: PLoS One. 2016;11(6):e0157255.


Implementation of Complex Biological Logic Circuits Using Spatially Distributed Multicellular Consortia.

Macia J, Manzoni R, Conde N, Urrios A, de Nadal E, Solé R, Posas F.

PLoS Comput Biol. 2016 Feb 1;12(2):e1004685. doi: 10.1371/journal.pcbi.1004685.


Network-analysis-guided synthesis of weisaconitine D and liljestrandinine.

Marth CJ, Gallego GM, Lee JC, Lebold TP, Kulyk S, Kou KG, Qin J, Lilien R, Sarpong R.

Nature. 2015 Dec 24;528(7583):493-8. doi: 10.1038/nature16440.


Dealing with the genetic load in bacterial synthetic biology circuits: convergences with the Ohm's law.

Carbonell-Ballestero M, Garcia-Ramallo E, Montañez R, Rodriguez-Caso C, Macía J.

Nucleic Acids Res. 2016 Jan 8;44(1):496-507. doi: 10.1093/nar/gkv1280.


Synthetic Protein Scaffolds Based on Peptide Motifs and Cognate Adaptor Domains for Improving Metabolic Productivity.

Horn AH, Sticht H.

Front Bioeng Biotechnol. 2015 Nov 23;3:191. doi: 10.3389/fbioe.2015.00191. Review.


Functionalizing Soft Matter for Molecular Communication.

Liu Y, Wu HC, Chhuan M, Terrell JL, Tsao CY, Bentley WE, Payne GF.

ACS Biomater Sci Eng. 2015 May 11;1(5):320-328.


Computational implementation of a tunable multicellular memory circuit for engineered eukaryotic consortia.

Sardanyés J, Bonforti A, Conde N, Solé R, Macia J.

Front Physiol. 2015 Oct 9;6:281. doi: 10.3389/fphys.2015.00281.


Rapid cell-free forward engineering of novel genetic ring oscillators.

Niederholtmeyer H, Sun ZZ, Hori Y, Yeung E, Verpoorte A, Murray RM, Maerkl SJ.

Elife. 2015 Oct 5;4:e09771. doi: 10.7554/eLife.09771.


Metabolic engineering of Bacillus subtilis for terpenoid production.

Guan Z, Xue D, Abdallah II, Dijkshoorn L, Setroikromo R, Lv G, Quax WJ.

Appl Microbiol Biotechnol. 2015 Nov;99(22):9395-406. doi: 10.1007/s00253-015-6950-1. Review.


Signal-to-Noise Ratio Measures Efficacy of Biological Computing Devices and Circuits.

Beal J.

Front Bioeng Biotechnol. 2015 Jun 30;3:93. doi: 10.3389/fbioe.2015.00093.


Modelling the effects of cell-to-cell variability on the output of interconnected gene networks in bacterial populations.

Politi N, Pasotti L, Zucca S, Magni P.

BMC Syst Biol. 2015;9 Suppl 3:S6. doi: 10.1186/1752-0509-9-S3-S6.


Mammalian synthetic biology: emerging medical applications.

Kis Z, Pereira HS, Homma T, Pedrigi RM, Krams R.

J R Soc Interface. 2015 May 6;12(106). pii: 20141000. doi: 10.1098/rsif.2014.1000. Review.


Ecological perspectives on synthetic biology: insights from microbial population biology.

Escalante AE, Rebolleda-Gómez M, Benítez M, Travisano M.

Front Microbiol. 2015 Feb 26;6:143. doi: 10.3389/fmicb.2015.00143. Review.


Bridging the gap: a roadmap to breaking the biological design barrier.

Beal J.

Front Bioeng Biotechnol. 2015 Jan 20;2:87. doi: 10.3389/fbioe.2014.00087. Review.


Evolving robust gene regulatory networks.

Noman N, Monjo T, Moscato P, Iba H.

PLoS One. 2015 Jan 23;10(1):e0116258. doi: 10.1371/journal.pone.0116258.


A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis.

Medema MH, Cimermancic P, Sali A, Takano E, Fischbach MA.

PLoS Comput Biol. 2014 Dec 4;10(12):e1004016. doi: 10.1371/journal.pcbi.1004016. Erratum in: PLoS Comput Biol. 2016 Mar;12(3):e1004767.


A bottom-up characterization of transfer functions for synthetic biology designs: lessons from enzymology.

Carbonell-Ballestero M, Duran-Nebreda S, Montañez R, Solé R, Macía J, Rodríguez-Caso C.

Nucleic Acids Res. 2014 Dec 16;42(22):14060-9. doi: 10.1093/nar/gku964.


Cell-free metabolic engineering: biomanufacturing beyond the cell.

Dudley QM, Karim AS, Jewett MC.

Biotechnol J. 2015 Jan;10(1):69-82. doi: 10.1002/biot.201400330. Review.

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