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Items: 1 to 20 of 47

1.

Analysis of single nucleic acid molecules in micro- and nano-fluidics.

Friedrich SM, Zec HC, Wang TH.

Lab Chip. 2016 Mar 7;16(5):790-811. doi: 10.1039/c5lc01294e. Review.

2.

A microfluidic device for epigenomic profiling using 100 cells.

Cao Z, Chen C, He B, Tan K, Lu C.

Nat Methods. 2015 Oct;12(10):959-62. doi: 10.1038/nmeth.3488. Epub 2015 Jul 27.

3.

Htt CAG repeat expansion confers pleiotropic gains of mutant huntingtin function in chromatin regulation.

Biagioli M, Ferrari F, Mendenhall EM, Zhang Y, Erdin S, Vijayvargia R, Vallabh SM, Solomos N, Manavalan P, Ragavendran A, Ozsolak F, Lee JM, Talkowski ME, Gusella JF, Macdonald ME, Park PJ, Seong IS.

Hum Mol Genet. 2015 May 1;24(9):2442-57. doi: 10.1093/hmg/ddv006. Epub 2015 Jan 8.

4.

Assaying the epigenome in limited numbers of cells.

Greenleaf WJ.

Methods. 2015 Jan 15;72:51-6. doi: 10.1016/j.ymeth.2014.10.010. Epub 2014 Oct 22. Review.

5.

Single molecule and single cell epigenomics.

Hyun BR, McElwee JL, Soloway PD.

Methods. 2015 Jan 15;72:41-50. doi: 10.1016/j.ymeth.2014.08.015. Epub 2014 Sep 7. Review.

6.

CTCF controls HOXA cluster silencing and mediates PRC2-repressive higher-order chromatin structure in NT2/D1 cells.

Xu M, Zhao GN, Lv X, Liu G, Wang LY, Hao DL, Wang J, Liu DP, Liang CC.

Mol Cell Biol. 2014 Oct;34(20):3867-79. doi: 10.1128/MCB.00567-14. Epub 2014 Aug 18.

7.

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.

Verkest A, Abeel T, Heyndrickx KS, Van Leene J, Lanz C, Van De Slijke E, De Winne N, Eeckhout D, Persiau G, Van Breusegem F, Inzé D, Vandepoele K, De Jaeger G.

Plant Physiol. 2014 Mar;164(3):1122-33. doi: 10.1104/pp.113.229617. Epub 2014 Jan 22.

8.

Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Aguilar CA, Craighead HG.

Nat Nanotechnol. 2013 Oct;8(10):709-18. doi: 10.1038/nnano.2013.195. Review.

9.

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells.

Neri F, Incarnato D, Krepelova A, Rapelli S, Pagnani A, Zecchina R, Parlato C, Oliviero S.

Genome Biol. 2013 Aug 29;14(8):R91. doi: 10.1186/gb-2013-14-8-r91.

10.

Maternal obesity induces epigenetic modifications to facilitate Zfp423 expression and enhance adipogenic differentiation in fetal mice.

Yang QY, Liang JF, Rogers CJ, Zhao JX, Zhu MJ, Du M.

Diabetes. 2013 Nov;62(11):3727-35. doi: 10.2337/db13-0433. Epub 2013 Jul 24.

11.

Swi/Snf chromatin remodeling/tumor suppressor complex establishes nucleosome occupancy at target promoters.

Tolstorukov MY, Sansam CG, Lu P, Koellhoffer EC, Helming KC, Alver BH, Tillman EJ, Evans JA, Wilson BG, Park PJ, Roberts CW.

Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):10165-70. doi: 10.1073/pnas.1302209110. Epub 2013 May 30.

13.

Enabling interspecies epigenomic comparison with CEpBrowser.

Cao X, Zhong S.

Bioinformatics. 2013 May 1;29(9):1223-5. doi: 10.1093/bioinformatics/btt114. Epub 2013 Mar 29.

14.

3-D DNA methylation phenotypes correlate with cytotoxicity levels in prostate and liver cancer cell models.

Gertych A, Oh JH, Wawrowsky KA, Weisenberger DJ, Tajbakhsh J.

BMC Pharmacol Toxicol. 2013 Feb 11;14:11. doi: 10.1186/2050-6511-14-11.

15.

Limitations and possibilities of low cell number ChIP-seq.

Gilfillan GD, Hughes T, Sheng Y, Hjorthaug HS, Straub T, Gervin K, Harris JR, Undlien DE, Lyle R.

BMC Genomics. 2012 Nov 21;13:645. doi: 10.1186/1471-2164-13-645.

16.

Methods for cancer epigenome analysis.

Nagarajan RP, Fouse SD, Bell RJ, Costello JF.

Adv Exp Med Biol. 2013;754:313-38. doi: 10.1007/978-1-4419-9967-2_15. Review.

17.

Detection of ultra-rare mutations by next-generation sequencing.

Schmitt MW, Kennedy SR, Salk JJ, Fox EJ, Hiatt JB, Loeb LA.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):14508-13. doi: 10.1073/pnas.1208715109. Epub 2012 Aug 1.

18.

Comparative epigenomic annotation of regulatory DNA.

Xiao S, Xie D, Cao X, Yu P, Xing X, Chen CC, Musselman M, Xie M, West FD, Lewin HA, Wang T, Zhong S.

Cell. 2012 Jun 8;149(6):1381-92. doi: 10.1016/j.cell.2012.04.029.

19.

Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.

Chen CY, Morris Q, Mitchell JA.

BMC Genomics. 2012 Apr 26;13:152. doi: 10.1186/1471-2164-13-152.

20.

A critical appraisal of tools available for monitoring epigenetic changes in clinical samples from patients with myeloid malignancies.

Grønbæk K, Müller-Tidow C, Perini G, Lehmann S, Bach Treppendahl M, Mills K, Plass C, Schlegelberger B; European Genomics and Epigenomics Study on MDS and AML (EuGESMA), COST Action BM0801..

Haematologica. 2012 Sep;97(9):1380-8. Epub 2012 Apr 4.

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