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Prediction of essential proteins based on subcellular localization and gene expression correlation.

Fan Y, Tang X, Hu X, Wu W, Ping Q.

BMC Bioinformatics. 2017 Dec 1;18(Suppl 13):470. doi: 10.1186/s12859-017-1876-5.


Mining Filarial Genomes for Diagnostic and Therapeutic Targets.

Bennuru S, O'Connell EM, Drame PM, Nutman TB.

Trends Parasitol. 2018 Jan;34(1):80-90. doi: 10.1016/ Epub 2017 Oct 12. Review.


A New Method for Identifying Essential Proteins Based on Network Topology Properties and Protein Complexes.

Qin C, Sun Y, Dong Y.

PLoS One. 2016 Aug 16;11(8):e0161042. doi: 10.1371/journal.pone.0161042. eCollection 2016.


Predicting Essential Genes and Proteins Based on Machine Learning and Network Topological Features: A Comprehensive Review.

Zhang X, Acencio ML, Lemke N.

Front Physiol. 2016 Mar 8;7:75. doi: 10.3389/fphys.2016.00075. eCollection 2016. Review. Erratum in: Front Physiol. 2016 Dec 06;7:617.


Identification of potential drug targets by subtractive genome analysis of Escherichia coli O157:H7: an in silico approach.

Mondal SI, Ferdous S, Jewel NA, Akter A, Mahmud Z, Islam MM, Afrin T, Karim N.

Adv Appl Bioinform Chem. 2015 Dec 8;8:49-63. doi: 10.2147/AABC.S88522. eCollection 2015.


Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes.

Luo J, Qi Y.

PLoS One. 2015 Jun 30;10(6):e0131418. doi: 10.1371/journal.pone.0131418. eCollection 2015.


Identifying essential proteins from active PPI networks constructed with dynamic gene expression.

Xiao Q, Wang J, Peng X, Wu FX, Pan Y.

BMC Genomics. 2015;16 Suppl 3:S1. doi: 10.1186/1471-2164-16-S3-S1. Epub 2015 Jan 29.


Identification of essential proteins based on ranking edge-weights in protein-protein interaction networks.

Wang Y, Sun H, Du W, Blanzieri E, Viero G, Xu Y, Liang Y.

PLoS One. 2014 Sep 30;9(9):e108716. doi: 10.1371/journal.pone.0108716. eCollection 2014.


Wolbachia transcription elongation factor "Wol GreA" interacts with α2ββ'σ subunits of RNA polymerase through its dimeric C-terminal domain.

Nag JK, Shrivastava N, Chahar D, Gupta CL, Bajpai P, Misra-Bhattacharya S.

PLoS Negl Trop Dis. 2014 Jun 19;8(6):e2930. doi: 10.1371/journal.pntd.0002930. eCollection 2014 Jun.


IFIM: a database of integrated fitness information for microbial genes.

Wei W, Ye YN, Luo S, Deng YY, Lin D, Guo FB.

Database (Oxford). 2014 Jun 11;2014. pii: bau052. doi: 10.1093/database/bau052. Print 2014.


In silico prediction of antimalarial drug target candidates.

Ludin P, Woodcroft B, Ralph SA, Mäser P.

Int J Parasitol Drugs Drug Resist. 2012 Jul 17;2:191-9. doi: 10.1016/j.ijpddr.2012.07.002. eCollection 2012 Dec.


Training set selection for the prediction of essential genes.

Cheng J, Xu Z, Wu W, Zhao L, Li X, Liu Y, Tao S.

PLoS One. 2014 Jan 22;9(1):e86805. doi: 10.1371/journal.pone.0086805. eCollection 2014.


A new computational strategy for predicting essential genes.

Cheng J, Wu W, Zhang Y, Li X, Jiang X, Wei G, Tao S.

BMC Genomics. 2013 Dec 21;14:910. doi: 10.1186/1471-2164-14-910.


DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements.

Luo H, Lin Y, Gao F, Zhang CT, Zhang R.

Nucleic Acids Res. 2014 Jan;42(Database issue):D574-80. doi: 10.1093/nar/gkt1131. Epub 2013 Nov 15.


Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny.

Wei W, Ning LW, Ye YN, Guo FB.

PLoS One. 2013 Aug 15;8(8):e72343. doi: 10.1371/journal.pone.0072343. eCollection 2013.


Anti-Wolbachia drug discovery and development: safe macrofilaricides for onchocerciasis and lymphatic filariasis.

Taylor MJ, Hoerauf A, Townson S, Slatko BE, Ward SA.

Parasitology. 2014 Jan;141(1):119-27. doi: 10.1017/S0031182013001108. Epub 2013 Jul 18. Review.


A new method for the discovery of essential proteins.

Zhang X, Xu J, Xiao WX.

PLoS One. 2013;8(3):e58763. doi: 10.1371/journal.pone.0058763. Epub 2013 Mar 21.


Analysis of gene expression from the Wolbachia genome of a filarial nematode supports both metabolic and defensive roles within the symbiosis.

Darby AC, Armstrong SD, Bah GS, Kaur G, Hughes MA, Kay SM, Koldkjær P, Rainbow L, Radford AD, Blaxter ML, Tanya VN, Trees AJ, Cordaux R, Wastling JM, Makepeace BL.

Genome Res. 2012 Dec;22(12):2467-77. doi: 10.1101/gr.138420.112. Epub 2012 Aug 23.


Comparative genomics analysis of Mycobacterium ulcerans for the identification of putative essential genes and therapeutic candidates.

Butt AM, Nasrullah I, Tahir S, Tong Y.

PLoS One. 2012;7(8):e43080. doi: 10.1371/journal.pone.0043080. Epub 2012 Aug 13. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/8ce51727-91b0-463f-9b4c-768aab0a230a.

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