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Items: 1 to 20 of 215


A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms.

Sze SH, Parrott JJ, Tarone AM.

BMC Genomics. 2017 Dec 6;18(Suppl 10):895. doi: 10.1186/s12864-017-4270-9.


RampDB: a web application and database for the exploration and prediction of receptor activity modifying protein interactions.

Topaz N, Mojib N, Chande AT, Kubanek J, Jordan IK.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax067.


Microbial communities in the reef water at Kham Island, lower Gulf of Thailand.

Somboonna N, Wilantho A, Monanunsap S, Chavanich S, Tangphatsornruang S, Tongsima S.

PeerJ. 2017 Aug 14;5:e3625. doi: 10.7717/peerj.3625. eCollection 2017.


Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis.

Tani H, Takeshita JI, Aoki H, Nakamura K, Abe R, Toyoda A, Endo Y, Miyamoto S, Gamo M, Sato H, Torimura M.

PLoS One. 2017 Jul 27;12(7):e0182032. doi: 10.1371/journal.pone.0182032. eCollection 2017.


A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms.

Sze SH, Pimsler ML, Tomberlin JK, Jones CD, Tarone AM.

BMC Genomics. 2017 May 24;18(Suppl 4):387. doi: 10.1186/s12864-017-3735-1.


Impact of genetic variation on three dimensional structure and function of proteins.

Bhattacharya R, Rose PW, Burley SK, Prlić A.

PLoS One. 2017 Mar 15;12(3):e0171355. doi: 10.1371/journal.pone.0171355. eCollection 2017.


Regulatory and activated effector T cells in chronic hepatitis C virus: Relation to autoimmunity.

Fouad H, El Raziky M, Hassan EM, Aziz GM, Darweesh SK, Sayed AR.

World J Hepatol. 2016 Oct 28;8(30):1287-1294.


Abundance and Biogeography of Picoprasinophyte Ecotypes and Other Phytoplankton in the Eastern North Pacific Ocean.

Simmons MP, Sudek S, Monier A, Limardo AJ, Jimenez V, Perle CR, Elrod VA, Pennington JT, Worden AZ.

Appl Environ Microbiol. 2016 Jan 4;82(6):1693-705. doi: 10.1128/AEM.02730-15.


Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data.

Fu S, Tarone AM, Sze SH.

BMC Genomics. 2015;16 Suppl 11:S5. doi: 10.1186/1471-2164-16-S11-S5. Epub 2015 Nov 10.


RFX transcription factors are essential for hearing in mice.

Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R.

Nat Commun. 2015 Oct 15;6:8549. doi: 10.1038/ncomms9549.


Genetic Polymorphisms in Inflammasome-Dependent Innate Immunity among Pediatric Patients with Severe Renal Parenchymal Infections.

Cheng CH, Lee YS, Chang CJ, Lin JC, Lin TY.

PLoS One. 2015 Oct 7;10(10):e0140128. doi: 10.1371/journal.pone.0140128. eCollection 2015.


Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications.

Clark T, Ciccarese PN, Goble CA.

J Biomed Semantics. 2014 Jul 4;5:28. doi: 10.1186/2041-1480-5-28. eCollection 2014.


Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization.

Mariotti M, Santesmasses D, Capella-Gutierrez S, Mateo A, Arnan C, Johnson R, D'Aniello S, Yim SH, Gladyshev VN, Serras F, Corominas M, Gabaldón T, Guigó R.

Genome Res. 2015 Sep;25(9):1256-67. doi: 10.1101/gr.190538.115. Epub 2015 Jul 20.


The microRNA-183 cluster: the family that plays together stays together.

Dambal S, Shah M, Mihelich B, Nonn L.

Nucleic Acids Res. 2015 Sep 3;43(15):7173-88. doi: 10.1093/nar/gkv703. Epub 2015 Jul 13. Review.


Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.

Lyon KF, Strong CL, Schooler SG, Young RJ, Roy N, Ozar B, Bachmeier M 2nd, Rajasekaran S, Schiller MR.

Nucleic Acids Res. 2015 Jul 27;43(13):6399-412. doi: 10.1093/nar/gkv580. Epub 2015 Jun 11.


Preferential Amplification of Pathogenic Sequences.

Ge F, Parker J, Chul Choi S, Layer M, Ross K, Jilly B, Chen J.

Sci Rep. 2015 Jun 11;5:11047. doi: 10.1038/srep11047.


CMRegNet-An interspecies reference database for corynebacterial and mycobacterial regulatory networks.

Abreu VA, Almeida S, Tiwari S, Hassan SS, Mariano D, Silva A, Baumbach J, Azevedo V, Röttger R.

BMC Genomics. 2015 Jun 11;16:452. doi: 10.1186/s12864-015-1631-0.


Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference.

Tan G, Muffato M, Ledergerber C, Herrero J, Goldman N, Gil M, Dessimoz C.

Syst Biol. 2015 Sep;64(5):778-91. doi: 10.1093/sysbio/syv033. Epub 2015 Jun 1.


Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange.

Fiore CL, Labrie M, Jarett JK, Lesser MP.

Front Microbiol. 2015 Apr 28;6:364. doi: 10.3389/fmicb.2015.00364. eCollection 2015.


Identification of Novel Crk-associated Substrate (p130Cas) Variants with Functionally Distinct Focal Adhesion Kinase Binding Activities.

Kumbrink J, Soni S, Laumbacher B, Loesch B, Kirsch KH.

J Biol Chem. 2015 May 8;290(19):12247-55. doi: 10.1074/jbc.M115.649947. Epub 2015 Mar 24.

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