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Items: 1 to 20 of 148

1.

FlyBase at 25: looking to the future.

Gramates LS, Marygold SJ, Santos GD, Urbano JM, Antonazzo G, Matthews BB, Rey AJ, Tabone CJ, Crosby MA, Emmert DB, Falls K, Goodman JL, Hu Y, Ponting L, Schroeder AJ, Strelets VB, Thurmond J, Zhou P; the FlyBase Consortium..

Nucleic Acids Res. 2017 Jan 4;45(D1):D663-D671. doi: 10.1093/nar/gkw1016.

2.

Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes.

Mbodj A, Gustafson EH, Ciglar L, Junion G, Gonzalez A, Girardot C, Perrin L, Furlong EE, Thieffry D.

PLoS Comput Biol. 2016 Sep 6;12(9):e1005073. doi: 10.1371/journal.pcbi.1005073.

3.

Genome-Wide Ultrabithorax Binding Analysis Reveals Highly Targeted Genomic Loci at Developmental Regulators and a Potential Connection to Polycomb-Mediated Regulation.

Shlyueva D, Meireles-Filho AC, Pagani M, Stark A.

PLoS One. 2016 Aug 30;11(8):e0161997. doi: 10.1371/journal.pone.0161997.

4.

Heterogeneity of transcription factor binding specificity models within and across cell lines.

Sharmin M, Bravo HC, Hannenhalli S.

Genome Res. 2016 Aug;26(8):1110-23. doi: 10.1101/gr.199166.115.

PMID:
27311443
5.

Genome-Wide Approaches to Drosophila Heart Development.

Frasch M.

J Cardiovasc Dev Dis. 2016 Jun;3(2). pii: 20.

6.

Stepwise Progression of Embryonic Patterning.

Sandler JE, Stathopoulos A.

Trends Genet. 2016 Jul;32(7):432-43. doi: 10.1016/j.tig.2016.04.004. Review.

PMID:
27230753
7.

Predicting Ancestral Segmentation Phenotypes from Drosophila to Anopheles Using In Silico Evolution.

Rothschild JB, Tsimiklis P, Siggia ED, François P.

PLoS Genet. 2016 May 26;12(5):e1006052. doi: 10.1371/journal.pgen.1006052.

8.

Understanding transcriptional regulatory networks using computational models.

He B, Tan K.

Curr Opin Genet Dev. 2016 Apr;37:101-8. doi: 10.1016/j.gde.2016.02.002. Review.

PMID:
26950762
9.

Dynamic Gene Regulatory Networks Drive Hematopoietic Specification and Differentiation.

Goode DK, Obier N, Vijayabaskar MS, Lie-A-Ling M, Lilly AJ, Hannah R, Lichtinger M, Batta K, Florkowska M, Patel R, Challinor M, Wallace K, Gilmour J, Assi SA, Cauchy P, Hoogenkamp M, Westhead DR, Lacaud G, Kouskoff V, Göttgens B, Bonifer C.

Dev Cell. 2016 Mar 7;36(5):572-87. doi: 10.1016/j.devcel.2016.01.024.

10.

Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis.

Luna-Zurita L, Stirnimann CU, Glatt S, Kaynak BL, Thomas S, Baudin F, Samee MA, He D, Small EM, Mileikovsky M, Nagy A, Holloway AK, Pollard KS, Müller CW, Bruneau BG.

Cell. 2016 Feb 25;164(5):999-1014. doi: 10.1016/j.cell.2016.01.004.

PMID:
26875865
11.

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE.

Curr Biol. 2016 Jan 11;26(1):38-51. doi: 10.1016/j.cub.2015.11.034.

12.

Expression of the Troponin C at 41C Gene in Adult Drosophila Tubular Muscles Depends upon Both Positive and Negative Regulatory Inputs.

Chechenova MB, Maes S, Cripps RM.

PLoS One. 2015 Dec 7;10(12):e0144615. doi: 10.1371/journal.pone.0144615.

13.

Genome-wide predictors of NF-κB recruitment and transcriptional activity.

Cieślik M, Bekiranov S.

BioData Min. 2015 Nov 26;8:37. doi: 10.1186/s13040-015-0071-3.

14.

Discovery of progenitor cell signatures by time-series synexpression analysis during Drosophila embryonic cell immortalization.

Dequéant ML, Fagegaltier D, Hu Y, Spirohn K, Simcox A, Hannon GJ, Perrimon N.

Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):12974-9. doi: 10.1073/pnas.1517729112. Erratum in: Proc Natl Acad Sci U S A. 2015 Nov 17;112(46):E6408.

15.

Logics and properties of a genetic regulatory program that drives embryonic muscle development in an echinoderm.

Andrikou C, Pai CY, Su YH, Arnone MI.

Elife. 2015 Jul 28;4. doi: 10.7554/eLife.07343.

16.

groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data.

Chae M, Danko CG, Kraus WL.

BMC Bioinformatics. 2015 Jul 16;16:222. doi: 10.1186/s12859-015-0656-3.

17.

Genome-wide analysis of androgen receptor binding sites in prostate cancer cells.

Cheng Y, Yu P, Duan X, Liu C, Xu S, Chen Y, Tan Y, Qiang Y, Shen J, Tao Z.

Exp Ther Med. 2015 Jun;9(6):2319-2324.

18.

From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks.

Li Y, Varala K, Coruzzi GM.

Trends Genet. 2015 Sep;31(9):509-15. doi: 10.1016/j.tig.2015.05.005. Review.

19.

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.

Wilken MS, Brzezinski JA, La Torre A, Siebenthall K, Thurman R, Sabo P, Sandstrom RS, Vierstra J, Canfield TK, Hansen RS, Bender MA, Stamatoyannopoulos J, Reh TA.

Epigenetics Chromatin. 2015 Feb 28;8:8. doi: 10.1186/1756-8935-8-8.

20.

Common binding by redundant group B Sox proteins is evolutionarily conserved in Drosophila.

Carl SH, Russell S.

BMC Genomics. 2015 Apr 13;16:292. doi: 10.1186/s12864-015-1495-3.

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