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The Regulatory Capacity of Bivalent Genes-A Theoretical Approach.

Thalheim T, Herberg M, Loeffler M, Galle J.

Int J Mol Sci. 2017 May 17;18(5). pii: E1069. doi: 10.3390/ijms18051069.


The epigenetic basis of hematopoietic stem cell aging.

Kramer A, Challen GA.

Semin Hematol. 2017 Jan;54(1):19-24. doi: 10.1053/j.seminhematol.2016.10.006. Epub 2016 Oct 24. Review.


Histone modification signature at myeloperoxidase and proteinase 3 in patients with anti-neutrophil cytoplasmic autoantibody-associated vasculitis.

Yang J, Ge H, Poulton CJ, Hogan SL, Hu Y, Jones BE, Henderson CD, McInnis EA, Pendergraft WF 3rd, Jennette JC, Falk RJ, Ciavatta DJ.

Clin Epigenetics. 2016 Aug 12;8:85. eCollection 2016.


Genetic and Epigenetic Mechanisms That Maintain Hematopoietic Stem Cell Function.

Kosan C, Godmann M.

Stem Cells Int. 2016;2016:5178965. doi: 10.1155/2016/5178965. Epub 2015 Dec 20. Review.


Immune Cell Identity: Perspective from a Palimpsest.

Rothenberg EV.

Perspect Biol Med. 2015 Spring;58(2):205-28. doi: 10.1353/pbm.2015.0020.


Low-Cell-Number Epigenome Profiling Aids the Study of Lens Aging and Hematopoiesis.

Zheng X, Yue S, Chen H, Weber B, Jia J, Zheng Y.

Cell Rep. 2015 Nov 17;13(7):1505-18. doi: 10.1016/j.celrep.2015.10.004. Epub 2015 Nov 5.


Epigenetic program and transcription factor circuitry of dendritic cell development.

Lin Q, Chauvistré H, Costa IG, Gusmao EG, Mitzka S, Hänzelmann S, Baying B, Klisch T, Moriggl R, Hennuy B, Smeets H, Hoffmann K, Benes V, Seré K, Zenke M.

Nucleic Acids Res. 2015 Nov 16;43(20):9680-93. doi: 10.1093/nar/gkv1056. Epub 2015 Oct 17.


Transcription factor competition allows embryonic stem cells to distinguish authentic signals from noise.

Sokolik C, Liu Y, Bauer D, McPherson J, Broeker M, Heimberg G, Qi LS, Sivak DA, Thomson M.

Cell Syst. 2015 Aug 26;1(2):117-129.


Nonparametric Bayesian Bi-Clustering for Next Generation Sequencing Count Data.

Xu Y, Lee J, Yuan Y, Mitra R, Liang S, Müller P, Ji Y.

Bayesian Anal. 2013 Dec;8(4):759-780.


PRC2 inhibition counteracts the culture-associated loss of engraftment potential of human cord blood-derived hematopoietic stem and progenitor cells.

Varagnolo L, Lin Q, Obier N, Plass C, Dietl J, Zenke M, Claus R, Müller AM.

Sci Rep. 2015 Jul 22;5:12319. doi: 10.1038/srep12319.


Epigenetic Control of Stem Cell Potential during Homeostasis, Aging, and Disease.

Beerman I, Rossi DJ.

Cell Stem Cell. 2015 Jun 4;16(6):613-25. doi: 10.1016/j.stem.2015.05.009. Review.


Ezh2 maintains retinal progenitor proliferation, transcriptional integrity, and the timing of late differentiation.

Zhang J, Taylor RJ, La Torre A, Wilken MS, Cox KE, Reh TA, Vetter ML.

Dev Biol. 2015 Jul 15;403(2):128-38. doi: 10.1016/j.ydbio.2015.05.010. Epub 2015 May 16.


Tracing dynamics and clonal heterogeneity of Cbx7-induced leukemic stem cells by cellular barcoding.

Klauke K, Broekhuis MJ, Weersing E, Dethmers-Ausema A, Ritsema M, González MV, Zwart E, Bystrykh LV, de Haan G.

Stem Cell Reports. 2015 Jan 13;4(1):74-89. doi: 10.1016/j.stemcr.2014.10.012. Epub 2014 Nov 26.


Cross talk between histone deacetylase 4 and STAT6 in the transcriptional regulation of arginase 1 during mouse dendritic cell differentiation.

Yang Q, Wei J, Zhong L, Shi M, Zhou P, Zuo S, Wu K, Zhu M, Huang X, Yu Y, Zhang H, Yin H, Zhou J.

Mol Cell Biol. 2015 Jan;35(1):63-75. doi: 10.1128/MCB.00805-14. Epub 2014 Oct 20.


Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis.

Pimkin M, Kossenkov AV, Mishra T, Morrissey CS, Wu W, Keller CA, Blobel GA, Lee D, Beer MA, Hardison RC, Weiss MJ.

Genome Res. 2014 Dec;24(12):1932-44. doi: 10.1101/gr.164178.113. Epub 2014 Oct 15.


Developmental gene networks: a triathlon on the course to T cell identity.

Yui MA, Rothenberg EV.

Nat Rev Immunol. 2014 Aug;14(8):529-45. doi: 10.1038/nri3702. Review.


Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal.

Sun D, Luo M, Jeong M, Rodriguez B, Xia Z, Hannah R, Wang H, Le T, Faull KF, Chen R, Gu H, Bock C, Meissner A, Göttgens B, Darlington GJ, Li W, Goodell MA.

Cell Stem Cell. 2014 May 1;14(5):673-88. doi: 10.1016/j.stem.2014.03.002.


Computational promoter modeling identifies the modes of transcriptional regulation in hematopoietic stem cells.

Park SJ, Umemoto T, Saito-Adachi M, Shiratsuchi Y, Yamato M, Nakai K.

PLoS One. 2014 Apr 7;9(4):e93853. doi: 10.1371/journal.pone.0093853. eCollection 2014.


The chromatin landscape and transcription factors in T cell programming.

Rothenberg EV.

Trends Immunol. 2014 May;35(5):195-204. doi: 10.1016/ Epub 2014 Apr 2. Review.

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