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Items: 12

1.

Regulation of mammalian transcription and splicing by Nuclear RNAi.

Kalantari R, Chiang CM, Corey DR.

Nucleic Acids Res. 2016 Jan 29;44(2):524-37. doi: 10.1093/nar/gkv1305. Epub 2015 Nov 26. Review.

2.

TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity.

Sammons MA, Zhu J, Drake AM, Berger SL.

Genome Res. 2015 Feb;25(2):179-88. doi: 10.1101/gr.181883.114. Epub 2014 Nov 12.

3.

DNA topology confers sequence specificity to nonspecific architectural proteins.

Wei J, Czapla L, Grosner MA, Swigon D, Olson WK.

Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16742-7. doi: 10.1073/pnas.1405016111. Epub 2014 Nov 10.

4.

RBPJ, the major transcriptional effector of Notch signaling, remains associated with chromatin throughout mitosis, suggesting a role in mitotic bookmarking.

Lake RJ, Tsai PF, Choi I, Won KJ, Fan HY.

PLoS Genet. 2014 Mar 6;10(3):e1004204. doi: 10.1371/journal.pgen.1004204. eCollection 2014 Mar. Erratum in: PLoS Genet. 2016 Jul;12(7):e1006209.

5.

Rotational positioning of nucleosomes facilitates selective binding of p53 to response elements associated with cell cycle arrest.

Cui F, Zhurkin VB.

Nucleic Acids Res. 2014 Jan;42(2):836-47. doi: 10.1093/nar/gkt943. Epub 2013 Oct 22.

6.

Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding.

He X, Chatterjee R, John S, Bravo H, Sathyanarayana BK, Biddie SC, FitzGerald PC, Stamatoyannopoulos JA, Hager GL, Vinson C.

BMC Genomics. 2013 Jun 28;14:428. doi: 10.1186/1471-2164-14-428.

7.

Radioprobing the conformation of DNA in a p53-DNA complex.

Karamychev VN, Wang D, Mazur SJ, Appella E, Neumann RD, Zhurkin VB, Panyutin IG.

Int J Radiat Biol. 2012 Dec;88(12):1039-45. doi: 10.3109/09553002.2012.698030. Epub 2012 Jun 21.

8.

Binding site specificity and factor redundancy in activator protein-1-driven human papillomavirus chromatin-dependent transcription.

Wang WM, Wu SY, Lee AY, Chiang CM.

J Biol Chem. 2011 Nov 25;286(47):40974-86. doi: 10.1074/jbc.M111.290874. Epub 2011 Sep 21.

9.

p53 binding to nucleosomes within the p21 promoter in vivo leads to nucleosome loss and transcriptional activation.

Laptenko O, Beckerman R, Freulich E, Prives C.

Proc Natl Acad Sci U S A. 2011 Jun 28;108(26):10385-90. doi: 10.1073/pnas.1105680108. Epub 2011 May 23.

10.

Working the kinks out of nucleosomal DNA.

Olson WK, Zhurkin VB.

Curr Opin Struct Biol. 2011 Jun;21(3):348-57. doi: 10.1016/j.sbi.2011.03.006. Epub 2011 Apr 7. Review.

11.

Impact of Alu repeats on the evolution of human p53 binding sites.

Cui F, Sirotin MV, Zhurkin VB.

Biol Direct. 2011 Jan 6;6:2. doi: 10.1186/1745-6150-6-2.

12.

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